RNA id: XM_034299706.1


Basic Information

Item Value
RNA id XM_034299706.1
length 1884
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC113524312
representative False

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 19176362 ~ 19315458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtttaatgctgCTATTTTATGCTATTGGTTTCTAATTGCTAATGTGTGTATTGTAATGATCAGCCAATTGTTTAAcaaaacaatcaatcaatcacacacacacacacatacgggTAAATATGAAACTGGTGTTTTGGCATTACTTTTCCTGAAAAGATTTCTGTCCACAAGGAACAGAAGAATGTCATGCTGATCCTGGGCGCTGTGTCTGACCCATGAGCTTTACGTTAACTCTTTCCGTTGGTTTGGACTGTGAGAAtgaacataaacacactttcatACACACCACAGCTTTACAAATCAAAGATGAACTTACAGGAAAGCGGGGCGGTGTGGTGGTGCAGTgtgtctcctcacagctccaggttccatCTCAGGTTACTGTgcctgtgggtttcctctgggttctcctgttttctcccaaaaacatactgGCGTACGTCATGGCCGTGTCGCTGTTCTGCTTCATCGGCACCTTCATCTGGATGATGATGTTCCTGTGTGGAGCTCATCACAACCGATCCTCCTGGACCACTGCAgacgtGGTGTATCACAGTACAGCTGCTCTGCTGTATCTCAGTGCTTCAGTGCTCTTGGCGTACGTCACCGTCGTTATCAGCCCCTTCAATCAGGTCGACTTCACTCCCTACAAACTCAACGTCTCTGCAGTGGTGTTCTCCTTCTGGGCCACACTGCAGTACATTGTACATGCTGCTTTCTCAGCCATCAGATGGAAATCTTATTAAAACACAGATGAttctgtactctgtgtgtgtatgtttgcgtGTGCGCGTGAAGGTGCGTGTGTGagcgtgaatgtgtgtatgtttgtgtgtgtgcatgaatgtgtttgtgtgtttgcgtgtgtgcatgaatgtgtttgtgtgtttgcatgtgtgcatgaatgtgtttgtgtgtgtgtgtttgtgtgtgtgtgtgcatgaatgtgtgAAAGTTTGTGTGTAATTTGTTGAAATAATCTAATGGTGCAcatcaggaaaaaataaaaagtctaaaacaGGAGTGTGTTGTTTTTGCCAGAATTTAGCTGAGGAGAACGTTGTGTGTTGTGATCTACTGTACTGATTCAAGTCTTTTGCATGTCTGTTGTAATGAATCGCacgtttttaatgatttaatgattcTGAATGATGTTATTatcacacaaacaaaaccaaacaaaagacCAATACACATGGTTCAatcttttgtttggttttgttcaTTGGAGTCGTTTGAGTCGTTTACAATGAACAGATTATTAGTGAATCGCCTGTGAATACAGGAGTGTGCTCTTGCTCcgtacatttattacattttacacacacacacacacacacacatacacacacacacagagcaaacacCAAGGGAATGTGCAGTTCAGTtcttatacttttttatttaatttcaaaacaGGTTTATGAACGAGTGAGAAAGACTCTctgtaaattaattattaaagtaaaatataaagtaattattattattattattattattattgttttttatttccattattattatgattattattctgtgtgtgtgttagtgttgatcTTTGCGAATGTACGACATGAAGCTTGTTCAGgaatttcagttatttttgttcacttcacaccttacacacactcGGACATGTTTACGGACAgcattcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattttctcacacaataaaaacaggaaaatctTCTTTCGTGCGTTGTTTTAAGGATGTGATTCCTCACTCTGAAATGTGCATCGTGTACATCTCAATGCAGTGCAATGACTTCTGGGTAAATTGTGCTTCTGAAGTGTTGATCAGTTTTTAATAAAGTTCACTTCTGCCTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436433 lncRNA downstream 4038 19304050 ~ 19304797 (-) True G368403
TU436408 lncRNA downstream 28987 19275825 ~ 19279848 (-) True G368388
TU436416 lncRNA downstream 33645 19272195 ~ 19275190 (-) True G368391
TU436415 lncRNA downstream 43367 19262561 ~ 19265468 (-) True G368390
TU436373 lncRNA downstream 66685 19176362 ~ 19242150 (-) False LOC113524312
TU436437 lncRNA upstream 12205 19327355 ~ 19340970 (-) True G368406
TU436469 lncRNA upstream 73826 19388976 ~ 19394961 (-) True G368432
TU436478 lncRNA upstream 89348 19404498 ~ 19404763 (-) True G368439
TU436559 lncRNA upstream 161115 19476265 ~ 19539669 (-) True G368503
TU436574 lncRNA upstream 192538 19507688 ~ 19508501 (-) True G368517
XM_026910431.2 mRNA downstream 20327 19281062 ~ 19288508 (-) True tmem178
XM_034299551.1 mRNA downstream 73649 19214863 ~ 19235186 (-) False mfng
XM_026910444.2 mRNA downstream 102845 19135589 ~ 19205990 (-) False elfn2a
XM_026910443.2 mRNA downstream 102845 19135589 ~ 19205990 (-) True elfn2a
XM_034299530.1 mRNA downstream 262208 18917049 ~ 19046627 (-) False LOC113524274
XM_026910441.2 mRNA upstream 946 19316096 ~ 19320662 (-) True LOC113524267
XM_026911845.2 mRNA upstream 234795 19549945 ~ 19556707 (-) True LOC113525355
XM_034299790.1 mRNA upstream 241927 19557077 ~ 19566528 (-) True LOC113525354
XM_026911844.2 mRNA upstream 241929 19557079 ~ 19566528 (-) False LOC113525354
TU436383 other downstream 85815 19213078 ~ 19223020 (-) True mfng
TU436324 other downstream 440784 18854477 ~ 18868051 (-) False si:ch211-246m6.5
TU436254 other downstream 579374 18701902 ~ 18729461 (-) False s100b
TU436255 other downstream 603747 18701902 ~ 18705088 (-) True s100b
TU435861 other downstream 1081056 18198642 ~ 18227779 (-) True LOC117596063
TU436580 other upstream 214737 19529887 ~ 19544880 (-) True G368523

Expression Profile