RNA id: TU483550


Basic Information

Item Value
RNA id TU483550
length 313
RNA type TUCP
GC content 0.52
exon number 2
gene id G407395
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 3557397 ~ 3562811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGAGTGAGCTAAAGGAGGAGCAGATGAAATCCCAGCAGAGaatccaggagaagcagaagaaggtgcaggagctgaaacaggcTGTGAACACTATAAAGctgagtgcacagacagcagtggaggacagtgagaggatctttactgagctgatcagctccatgGAGAAAAAGCGCTCGGAGGTGACGgagctgatcagagctcaggagaagaCTGAAGTGAGTCGAGCTGAACGACTCCTGgagcaactggagcaggagattgctgatcttcagaggagagtcactgagctggagcagctttcacacacacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483631 lncRNA upstream 33739 3504938 ~ 3523658 (+) True G407457
TU483636 lncRNA upstream 44972 3512069 ~ 3512425 (+) True G407461
TU483593 lncRNA upstream 142252 3413949 ~ 3415145 (+) True G407427
TU483591 lncRNA upstream 143852 3411559 ~ 3413545 (+) True G407426
TU483570 lncRNA upstream 162592 3394528 ~ 3394805 (+) True G407413
TU483662 lncRNA downstream 12132 3574943 ~ 3578196 (+) False G407469
TU483664 lncRNA downstream 12132 3574943 ~ 3578196 (+) False G407469
TU483647 lncRNA downstream 12427 3575238 ~ 3578196 (+) False G407469
TU483651 lncRNA downstream 12427 3575238 ~ 3578897 (+) True G407469
TU483659 lncRNA downstream 12427 3575238 ~ 3578196 (+) False G407469
XM_026917881.2 mRNA upstream 6084 3546164 ~ 3551313 (+) True LOC113528980
XM_034301976.1 mRNA upstream 6084 3546242 ~ 3551313 (+) False LOC113528980
XM_026917882.2 mRNA upstream 7402 3546164 ~ 3549995 (+) False LOC113528980
XM_026917800.2 mRNA upstream 18820 3534200 ~ 3538577 (+) True LOC113528940
XM_026917801.2 mRNA upstream 18821 3534201 ~ 3538576 (+) False LOC113528940
XM_026917385.2 mRNA downstream 2592 3565403 ~ 3574144 (+) True ppil4
XM_034301990.1 mRNA downstream 29332 3592143 ~ 3665849 (+) True cdk19
XM_034302161.1 mRNA downstream 110041 3672852 ~ 3719295 (+) True tab2
XM_034302159.1 mRNA downstream 110041 3672852 ~ 3719295 (+) False tab2
XM_034302160.1 mRNA downstream 110041 3672852 ~ 3719295 (+) False tab2
TU483497 other upstream 387683 3169289 ~ 3169714 (+) True G407358
XR_003402993.2 other upstream 881699 2664900 ~ 2675698 (+) False fam228a
XR_004577607.1 other upstream 881793 2664900 ~ 2675604 (+) False fam228a
TU482612 other upstream 992880 2560931 ~ 2564517 (+) False LOC117596540
TU482765 other upstream 1179061 2377377 ~ 2378336 (+) True G406797
XR_004577674.1 other downstream 110041 3672852 ~ 3750247 (+) False tab2
XR_004577675.1 other downstream 110041 3672852 ~ 3750247 (+) False tab2
XR_004577676.1 other downstream 110041 3672852 ~ 3750191 (+) False tab2
XR_004577677.1 other downstream 110041 3672852 ~ 3750191 (+) False tab2
TU483674 other downstream 110115 3672926 ~ 3708369 (+) False tab2

Expression Profile