RNA id: XM_034302159.1


Basic Information

Item Value
RNA id XM_034302159.1
length 2893
RNA type mRNA
GC content 0.58
exon number 8
gene id tab2
representative False

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 3672852 ~ 3750247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttaataataataataataataataataaataataataataataataattaagaaaccaaaacaaagcaatttaaaaaaaaaggaaaggaatcAGCGAGTGGGTGAAACATTGAGCGGGGGGCGACGGACGGACTCGGTGTCCCCCCCGGACTGTGAAGTGAAGTTACGCCGTCCTCAGCGCACTTAGGCCCGGCTCCGAGTTCCTCCTCCTGCCCGGCCCTGACACCGAGACCGACACGGAGACGGAGAGAAGCCTCGGGCGGCTCCGGTGTGGAAGGCGGCCCGGGGAGCGGCGGCTGCATTCACGGACacgctcattcacagagacgaAGTGGAAGCGCAGCAGGAAGGAACGAAGACGAGCGGCGTCTCTACACGTGTGTCTGGACGTGATGTTTGGAGATGAAaaCAAAAGATGCTGTGatagagcgagtgtgtgtgcatgagtgtgtgcgCTGAGGTCCACCCAGTCCTGCCAGTCCCCGAATGGCACAGGGAAATCAGCAGATTGACACTCAAATTCTGCAACAACTGCGTCAGAAGTTTCCAGAAGTGCCAGAGGGCGTGGTCTCTCAGTGTGTCATACAGaataAGAACGACTTGGCAGCGTGTTGTGAGTACCTGACCCAGGTGAGTCCCGGCTTCCTGTACAGCGAGGGCAGCCCGAGTGTGACGGACCTGCGCAATCACATGACCCAGCTCAACGTGGGCGTGTCACAGAATACCCATGGTGCCGTGCAGCATGAGCCAGTGAGGATGAACGGCAGCAGGACTCTCTCGCACAGCCTGAGTGACGGGCCCGTCAACGGTCCCCCGACTCCGGCCTCTGACTTCTACCAGGCAGAgtctcagtcacacacacacactcacacacacgcacccgcCGCCTTCTGCGTAATGGAGCAGGCGCGAAAGCCACAGCCACCGCAGCACCTTGGCCTGTACCAGCTCGGTGTCAAAGGTCAGGGCTCGGCCACGTCCCTGGCCGCCACACCCCGTTTTAACCCTATCACGGTGACGCTGGCCCCCAACGCCGGCCGAAACACGCCCACCTCGCTGCACATTCACGGTGGGCCTCAGGCTGGCCCCAACAGCCCCAACTCCATCTACATCCGGCCCTACGTCACCCAGATCTCACACCCAGGCGGCCCTCACCACCAGACCTCGCACGTTTACATGCCCATCAGTTCTCCTACCAACCCGCAGCCCCCCTCGGCCTTTCAGGCTCCGTCCGCCGCAGCCTCTCAGGCCTCTTCCTCGTCCTCCTCGTCGTCATCCTCATCTGTGCCTTCATCTTTACCGGCGATGGCGGCGGCCCCCTCGCTCGCGTCCTCCTTCAGCCAGTTCAACATCCAGAACATCTCCACAGGGCCCAGAAAGAACCAGATCGAGATCAAGCTCGAGTCTCCGCAGAGGGTGGGCGGAGCTGCCGCTGCTGCCGCCACGGCGACGCTGATGTGCTCCGCCTCTGCTCCTCGACCAGCCTCGGCTTCTGGGTCGTCGTCCTGCCCGTcaccttcctcctcttcctccactcCGCTCTCAAtcgagggggcggggcttagccGAAGCCAGCCCACTGTCTACATCGCTGCCTCTCCTCCTGCCGCTGCTGCCACGACGACGCCGTCAGATGAGTGCGCGCTGATCCCTCCATCCGGTCGCTCGCAGCCTAAATTCTACATTTCCGCTAACGCGTCTTCGGATGAGAGCGGTACTCGGAACCCGCCCACAGTATACATATCGGCCAACCCATCTCTTCCCGGCGTGACGGGAGGGCGGAGCCTAGGTGGCCAAGTCAGCATGGGGCCCGCCTACATCCATCACCACCCGCCCAAATCCCGCAGCTCGGTGGGGGCGGGAGGCGTGGCTACATCGCCGCGCGTCGTGGTGACGCAGCCCAACACCAAATACACCTTCAAGATCACGGTGTCACCGAACAAGCCGCCGGCCATGTCCCCCGGGGTGGTGTCGCCCACCTTCGAGCCCACCAACATGCTCAGCGTGCCCGCCGATCAGCACTACCCCGAGCCCGAGGCCATCAGCCTGCCTGAGCCGCTCTCGCCCAACCGAGACCTGAGAGCCACAGAGAGCCGTCGGCCCAGCATGGGCTCTGACGACGCCGCATACACacaagcattGTTGGTGCATCAGAAGGCACGCATGGAACGTCTGTGTCACGAGCTCAAGCTGAAAAAGAAGAACCTGGAGAAACTCAAAGAGGAGGTGAACGAAATGGAGAACGACCTCACGAGGAGACGACTGCAGAGGTCCAACTCGGTGTCTCAGATCCCGTCTctTGATGAGATGCAGCAGCTGAGGTGTAAGAACAGGTTACTGCAGATCGACATCGACTGTTTAACTAAAGAGATCGACCTCCTTCAGGCGCGTggACCACACTTCAATCCCAGTGCGATCCATAACTTTTACGACAACATCGGCTTCCTCGGTCCCGTCCCCCCAAAACCCAAAGGTACTCCGGCAGCAGagtcggGCAGTAAGAATATGAAGACGGTGTCTGAGGCTGAAGATGACGACGGGGTTCAGTGGGGGTGTACAGCCTGCACCTTCCTCAACCATCCCGCCCTCAACCGCTGTGAACAGTGTGAATTTCCACGACACTTCTGAGcccctaatacacacacacacacacacacacacacacacatgcacacacacacacacacacacacacacacacgtgcacacacgcTCAAACACATTGACATGTCAGCTAGGCTTTGTTACAGACAACCTGCAGAAGTATGGAcatgaatgttgtgtgtgtgtgtgtctctctctcttgctgtctctctctttgctcaCTGTTTGTCtctattgctctctctctctctctctctctctctcgctgtctctgtcCGTCTCCCTCAAT

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483673 lncRNA upstream 7451 3662036 ~ 3665401 (+) False cdk19
TU483672 lncRNA upstream 11099 3661283 ~ 3661753 (+) False cdk19
TU483639 lncRNA upstream 81386 3587442 ~ 3591466 (+) True G407463
TU483663 lncRNA upstream 94656 3575238 ~ 3578196 (+) False G407469
TU483698 lncRNA downstream 3592 3722887 ~ 3725260 (+) True G407499
TU483705 lncRNA downstream 24118 3743413 ~ 3743666 (+) True G407506
TU483758 lncRNA downstream 124390 3843685 ~ 3851423 (+) False LOC113528760
TU483751 lncRNA downstream 149992 3869287 ~ 3885991 (+) False LOC117596542
XR_004577667.1 lncRNA downstream 151664 3870959 ~ 3871861 (+) True LOC117596607
XM_034301990.1 mRNA upstream 7003 3592143 ~ 3665849 (+) True cdk19
XM_026917385.2 mRNA upstream 98708 3565403 ~ 3574144 (+) True ppil4
XM_034302013.1 mRNA upstream 108288 3560782 ~ 3564564 (+) True LOC113528981
XM_034301967.1 mRNA upstream 113561 3555927 ~ 3559291 (+) False LOC117596554
XM_034301968.1 mRNA upstream 114094 3555804 ~ 3558758 (+) False LOC117596554
XM_034301886.1 mRNA downstream 92595 3811890 ~ 3863480 (+) True LOC113528760
XM_034301887.1 mRNA downstream 157386 3876681 ~ 3934235 (+) True LOC117596542
XM_034302095.1 mRNA downstream 215119 3934414 ~ 3940175 (+) False LOC117596606
XM_034302097.1 mRNA downstream 215122 3934417 ~ 3940171 (+) False LOC117596606
XM_034302096.1 mRNA downstream 215401 3934696 ~ 3940174 (+) True LOC117596606
TU483550 other upstream 110041 3557397 ~ 3562811 (+) True G407395
TU483497 other upstream 503138 3169289 ~ 3169714 (+) True G407358
XR_003402993.2 other upstream 997154 2664900 ~ 2675698 (+) False fam228a
XR_004577607.1 other upstream 997248 2664900 ~ 2675604 (+) False fam228a
TU482612 other upstream 1108335 2560931 ~ 2564517 (+) False LOC117596540
TU483755 other downstream 157380 3876675 ~ 3881622 (+) False LOC117596542
XR_004577669.1 other downstream 936669 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other downstream 936669 4655964 ~ 4659695 (+) False LOC113529331
TU485026 other downstream 2014500 5733795 ~ 5736261 (+) False lyrm2
trnag-gcc_30 other downstream 2023497 5742792 ~ 5742862 (+) True trnag-gcc_30

Expression Profile