RNA id: XM_026917385.2


Basic Information

Item Value
RNA id XM_026917385.2
length 1964
RNA type mRNA
GC content 0.48
exon number 13
gene id ppil4
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 3565403 ~ 3574144 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCTCTACAATGTCGGACACGCGCTTTGGTTCCGCGCATGCGCAGTCCGGTCTGAATTTTGAACCAGAATGGCGGTGTTGCTAGAAACAACATTAGGCGACATTGTAGTGGACTTATACACCGAGGAAAGACCCAAAGCCTGCTTGAACTTCTTGAAGCTGTGTAAAATCAAGTTCTACAACTACTGCCTCATTCACAATGTCCAGAGAGATTTTATCATTCAGACGGGTGACCCTACAGGCACTGGCCGAGGAGGAGAGTCCGTGTTCTGtaAACTGTACGGGGATCAAGCACGCTTCTTCGATGCAGAGAAGGCTCCCCGGATCAAGCACAAGAAGAAGGGGACGGTCTCCATGGTGAACAACGGCAACGAGCAGCACGGCTCTcagTTCCTGATCACTACCGGAGAGAATCTGGACTACCTGGACGGTGTTCACACCGTGTTCGGGGAGGTCACGGAGGGAATGGACGTCTTGGCCAAAATCAACGAGGCATTCGTGGACAAAGACTTCATTCCTTACCAGGACATCAGAATAAATCACACGGTCATTCTGGACGACCCGTTTGAcgaccctccagacctgccggTGCCGGATCGATCCCCCGAGCCCACGAAACAACAGCTGGACagcgGCCGTATTGGAGCTGATGAAGTGATAAACGACACTGAAGGGAAGGATGCAGAAGAGCTGGATGAACTGATAAAAGAGAAGGAATCAAAGACACAAGCCATCCTGCTGGAGATGGTGGGCGATCTGCCCGATGCAGATGTTAAACCCCCGGAGAAcgtgttgtttgtgtgtaagcTGAACCCGGTCACCACTGACGAGGACCTAGAGATCATCTTCTCTCGCTTCGGCACAATCCAGTGCTGTGAGATCATCAGGGACTGGAAGACGGGCGAGTCTCTGTGCTACGCTTTCATCGAGTTTGAGAAGGTGGAGGACTGTGAGAAAGCGTACTTTAAGATGGACAACGTGCTGATTGACGACCGACGCATCCACGTGGACTTCAGCCAGTCTGTGTCCAAGATCAAATGGAAGggcaaagGTGGGAAGTACACTAAAGATGATTTCAGGGCCTATGAGAAAGACCTGGACAACAGATCCAAACTGGCTCTAAAAGACAAAATCAAACCCAAGCAAGATTCTCGTTACGACCTTCTCCTGgacgaggaagaggaggacgTGGGGCGGAGGGAAGACAGGAAGCAGCGGGAGAAGAGGCGTCAGTCAGACAGCGAAGACGACAGGAGGCCAAAGAAATCGAAGGATGCCGAGCAGAGCCGGAGAGAGCggaaagaaagcaagcaacGATCGCGCTCTCGTTCCAGAGACCGGGAGAAGGACAGATACAGAGAGCGAGACAgggagagggatagagagagagagagagagagggacagggacagagacagagacagggacagtCACCATAAACACGGTAAGCACAAGCAGAAAAGCCACAAATGTGATCGCAGCCGCAGCCCAAAGAGGTCGAAGGACAAGGAGCGCAGCAGACATCGCTGATACTGATTTCCTAAAAACCAACACGGACACTCGGGATTATGGGATGATGACATACACGTAGGTTTAAACACCATCGCAGAGTGACACTTCTGtctgaatttgttttattacagtttaataacTGGTACTGCcacagaacaaacaaaatgacacCAATGAAATTAGGAAAGTTAAATCTGTGTGGAacttattaaatgttaatgtgaccctaaatgagtgctttatttattaaagactgaTGCAGCCCATAATCCTGTACATCTATGGTTCTCAAAATGGCGGCgatttgtgtaatttttaatgttgttacaTTTGCGGAAACTACAAATCACCTTCATCAGAGTtatgtttataattaatgtCAACTAGAATCTAATGACAAGGGGTAATgtaggtggaaagttcagaaattaaaaataataaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K12735 PPIL4; peptidyl-prolyl cis-trans isomerase-like 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483631 lncRNA upstream 41745 3504938 ~ 3523658 (+) True G407457
TU483636 lncRNA upstream 52978 3512069 ~ 3512425 (+) True G407461
TU483593 lncRNA upstream 150258 3413949 ~ 3415145 (+) True G407427
TU483591 lncRNA upstream 151858 3411559 ~ 3413545 (+) True G407426
TU483570 lncRNA upstream 170598 3394528 ~ 3394805 (+) True G407413
TU483662 lncRNA downstream 799 3574943 ~ 3578196 (+) False G407469
TU483664 lncRNA downstream 799 3574943 ~ 3578196 (+) False G407469
TU483647 lncRNA downstream 1094 3575238 ~ 3578196 (+) False G407469
TU483651 lncRNA downstream 1094 3575238 ~ 3578897 (+) True G407469
TU483659 lncRNA downstream 1094 3575238 ~ 3578196 (+) False G407469
XM_034302013.1 mRNA upstream 839 3560782 ~ 3564564 (+) True LOC113528981
XM_034301965.1 mRNA upstream 6112 3555795 ~ 3559291 (+) True LOC117596554
XM_034301966.1 mRNA upstream 6112 3555798 ~ 3559291 (+) False LOC117596554
XM_034301967.1 mRNA upstream 6112 3555927 ~ 3559291 (+) False LOC117596554
XM_034301968.1 mRNA upstream 6645 3555804 ~ 3558758 (+) False LOC117596554
XM_034301990.1 mRNA downstream 17999 3592143 ~ 3665849 (+) True cdk19
XM_034302161.1 mRNA downstream 98708 3672852 ~ 3719295 (+) True tab2
XM_034302159.1 mRNA downstream 98708 3672852 ~ 3719295 (+) False tab2
XM_034302160.1 mRNA downstream 98708 3672852 ~ 3719295 (+) False tab2
XM_034302162.1 mRNA downstream 117712 3691856 ~ 3719295 (+) False tab2
TU483550 other upstream 2592 3557397 ~ 3562811 (+) True G407395
TU483497 other upstream 395689 3169289 ~ 3169714 (+) True G407358
XR_003402993.2 other upstream 889705 2664900 ~ 2675698 (+) False fam228a
XR_004577607.1 other upstream 889799 2664900 ~ 2675604 (+) False fam228a
TU482612 other upstream 1000886 2560931 ~ 2564517 (+) False LOC117596540
XR_004577674.1 other downstream 98708 3672852 ~ 3750247 (+) False tab2
XR_004577675.1 other downstream 98708 3672852 ~ 3750247 (+) False tab2
XR_004577676.1 other downstream 98708 3672852 ~ 3750191 (+) False tab2
XR_004577677.1 other downstream 98708 3672852 ~ 3750191 (+) False tab2
TU483674 other downstream 98782 3672926 ~ 3708369 (+) False tab2

Expression Profile