RNA id: TU483651


Basic Information

Item Value
RNA id TU483651
length 3080
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G407469
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 3574943 ~ 3578897 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgacatttatttatttatttgtatttaacgCATCAAGCTCATAGTACAGATATTTAGCACATCTTGATCAACCAAGGAAATAGCAAGAGAATCAGAATAGCAAAGTTTCCCTTTCCCCCTCAACATCCAGAGCACAGTCACGCAGCAGCCTTCCTCTTTCAAGTGcagcggggaaaaaaaaaaaaaaaggatccaATTCATCCACAGTCACCTCAGAATCTATTGGGGCAAGGGGGGgaatatcactgaaaaaaagtgggcatgaaaaaaaaattcagttggTCCACATAATGTAtagaaaaaagtacaaaaatatgcaaatttaaaaacgaaaaaaagaggAATGCCCCAAACTATGCTAGGGGGAGTTTAGAAAAATTTTCAGCCACAATTCGACTCTCAAGACTCAACTTCCTGCCAAATGGTCCATATGGAAGATATTAGTTTAAGACCTTTCCCTGGTGAGCCTGGTAGAGATGCTTATTAGAGATGAAGGATATTAGAGATGTCGCGATGCTTTTAGAGAGGCTGTGAGGATTTTAGAGAGGTCGCCAGGATACTGGAGATGTCGCGATGCTTTTAGAGAGGCTGTGAGGATTTTAGAGAGGTCGCGAGGATACTGGAGATGTCGCGATGCTTTTAGAGAGGCTGTGAGGATTTTAGAGAGGTCGCGAGGATACTGGAGATGTCGCGATGCTATTAGAGAGGCTGTGAGGATACTGGAGATGTCGCAATTCGTTTGGAGATGTCGCGAGGATTTTGGAGAGGCTACAAATCTTGACTGTACAGAATGGTTGTGGCTCAGCCCTGCACTTAGATTAAACAAGTGCATGAAATACAAGAGGTACATAAAATTCAAGATTTTACTTAAACTTTATCAAATTGCAGTGAAAAATGTAACTATTTTTGCACATCCGGCTGTTCTCAAAACTGCCCCTTCGGGTATTACAGTTTAAAATACATGAGTACATTTCAGAACCCAAAAGCAGGGCTGAGAACACAACgctaaaaatttttttttccccctctgtaATGGGTTTCAGTAAGAGCTGGAGCTCTTGTTTAGGGAGGACGCCTTGTTTCCCTGTTTGGCAGCAGGACATTCACACTCTCTGGCTGGAAAGGCTTCATGAATTTTGCCAAATGGGGAAATAAAGTCCTCAAATCATCTCTCCTGAGTCAAAGTCTtgtggaaagttttttttttcccttctgaaAGACCTAAATGCCTCTGCGCTCgataatatttatattcttttgtAGGTGAGAGCTGGTTTTAATTTCCGATAAGGAACGGAACGAATTGTTTAACTGGGAGGACGATGGAGAACCCGTGACAGAGGATTGATCATTTAAAGCTACTTTTTGTCAATTTGGGAGCGATTGAAAGTGAACCGTTGCCTGCACTAATATTTTAGTCCATCGTGAGCCGCACAGCAGAATTTAGCATCTCTTTGAGCACGCCCTGGGAAAGGTCTTTAATttgagaaagagcaagagagagtccaaaaaaaaaaaatgtaaaaaagtggACACACGAATGTCAGTGCATGTAGACTGCACTATTCACATGCAGCATGTAGGGGACGAGGCACTGGAGTCACATTTTTGACTGGttcactgttttttaaaaaacaaacaaaaaagcagcagTTGATGCAACTGTTAAGTGTGGAATGATCCGGGAGAACCCTGACATGCTCAGATCCATGCGCGTCTATTGTGTGCGCTTATCAGGGATGTGTATTGTTTAGGAAATggggtgagaaagaaagagagaaaaaaaaaaaagcgctttGCTGGGGAACGGGCACCATGCTGACCAGCCCTCAGGACTGGAGGGGTCCTGAACAATGAGAGGAAAACAAAAGACCAGGCATTCACGGTATTCGCACACGTGTGGAACGGCTCCTCGCACACGGCTACATTCACGGCCCTTTTACAATCGCTGACTTTTTTCATTCAGAGGCatggaatatttaaaaaaaaaaaaaaaaacaacccgtGAGTGAAATAAGGtgccttttgttttgttttagtgcTTAAACAAGACGCTTTGGTGTTTTCGGTGCTCATTTTAAAGTgcaattttatactttttttttttttccaaaaggcTTGTTTGGTTGTGCACTTTATTAGTGAAAAGGCATTGAGAGAGTCTCAgggtttaatatatatatttattagattatatatttataaatttaatttaagtttttATTAGTGCTGTATTTCAAAATCAGGCTTATTGAATTGGCAGGGTGtgaggttttatttaaaatatatatatatatttttttgaggTTTGGGTGGAGTTTTGAAACCCGACACGTCGCTGATTAAGACGTGATGTGGCGCGGGCGACGAGACGGATCTGAGCATGCCAGGGTCCCTGCTTAGTGGGCGCGGAAACCCTGTCTGTGGAGGATGAGGGGGGACACCTGCAGGAAGGGGAGGCTCCTCAACTCTACATGCACTTCAAGATCACAGCAAGAGTGAGCTAGAATATCTACACGGACACGACGAGAGCTTTCATGCAACATATCTACGGATCGGGTACGAGGACGTTTACGGGATAAACTCGCGATACAGCTACAGTAATGAAACTccgagcagcagcagcagcagccttgTGGCTCCGGCCGCTTTCTTTCTGCGCTTTCTCATCTTTAGCTCTGCTGGCTCTGCTGCGGCTTCTTAGCGTAACTGGTAAAGACGAAGTTGTAGTCGTTGAAGTGGGCCAGCTGGCGATCCATGCGCCTGTAGCCGTCGAGTTTCTGCGCAGACGAGAACACGCTGCGACACTTGGAGcgcttctCTGATTAACAAAAAGCGTAGTCACAAATTTCCCTGGCTTGAAGACGTCCACGACTTTTCGGACGAGGTCGTCGTAGGACGTCTGGGAGAGGTTGGTTTCGAAACTAACGTACGAGAACTCTGGCTCTGGGGTGATGTGAATCGTCCAGTAAGTTCCCTGTAGAACAATGCAATCGCAAAACCAGTCAAGAGAAACCGCTAAAGTTTAttcactttttcatttaaaaacaaaacaaatctgtaaCGTTAAAAGGCTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483631 lncRNA upstream 51580 3504938 ~ 3523658 (+) True G407457
TU483636 lncRNA upstream 62813 3512069 ~ 3512425 (+) True G407461
TU483593 lncRNA upstream 160093 3413949 ~ 3415145 (+) True G407427
TU483591 lncRNA upstream 161693 3411559 ~ 3413545 (+) True G407426
TU483570 lncRNA upstream 180433 3394528 ~ 3394805 (+) True G407413
TU483639 lncRNA downstream 8545 3587442 ~ 3591466 (+) True G407463
TU483672 lncRNA downstream 82386 3661283 ~ 3661753 (+) False cdk19
TU483673 lncRNA downstream 83139 3662036 ~ 3665401 (+) False cdk19
TU483698 lncRNA downstream 143990 3722887 ~ 3725260 (+) True G407499
TU483705 lncRNA downstream 164516 3743413 ~ 3743666 (+) True G407506
XM_026917385.2 mRNA upstream 1094 3565403 ~ 3574144 (+) True ppil4
XM_034302013.1 mRNA upstream 10674 3560782 ~ 3564564 (+) True LOC113528981
XM_034301966.1 mRNA upstream 15947 3555798 ~ 3559291 (+) False LOC117596554
XM_034301990.1 mRNA downstream 13246 3592143 ~ 3665849 (+) True cdk19
XM_034302161.1 mRNA downstream 93955 3672852 ~ 3719295 (+) True tab2
XM_034302159.1 mRNA downstream 93955 3672852 ~ 3719295 (+) False tab2
XM_034302160.1 mRNA downstream 93955 3672852 ~ 3719295 (+) False tab2
XM_034302162.1 mRNA downstream 112959 3691856 ~ 3719295 (+) False tab2
TU483550 other upstream 12427 3557397 ~ 3562811 (+) True G407395
TU483497 other upstream 405524 3169289 ~ 3169714 (+) True G407358
XR_003402993.2 other upstream 899540 2664900 ~ 2675698 (+) False fam228a
XR_004577607.1 other upstream 899634 2664900 ~ 2675604 (+) False fam228a
TU482612 other upstream 1010721 2560931 ~ 2564517 (+) False LOC117596540
XR_004577674.1 other downstream 93955 3672852 ~ 3750247 (+) False tab2
XR_004577675.1 other downstream 93955 3672852 ~ 3750247 (+) False tab2
XR_004577676.1 other downstream 93955 3672852 ~ 3750191 (+) False tab2
XR_004577677.1 other downstream 93955 3672852 ~ 3750191 (+) False tab2
TU483674 other downstream 94029 3672926 ~ 3708369 (+) False tab2

Expression Profile