RNA id: XR_004577669.1


Basic Information

Item Value
RNA id XR_004577669.1
length 1340
RNA type misc_RNA
GC content 0.40
exon number 6
gene id LOC113529331
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 4655964 ~ 4659695 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTTTGATGTGGCAGCCATCTTAGAGCTGAAAGACCAGCACGGACACAGACGTTTTGGCTAGATTTTTAGATAAAAACGCAAAAGCAAGGATGTAGTCCATTGCTGTGATTTGCATtgtatttaaaatggaaaatcaaaGGCTGCTGGAGTTGGAGAGGCTGATAAGTGAAGAGCGGTATAACTACATCAAAGCGGGTGCTAAATTTTGCTCATACCAGTTTATAAGAACATATATCATATTTGGCCGCCTTTCACATTATGTTCCTAAAATTTCCAAATTGCAAAGATCTTTTTAATTCTGACAAGTTGTTCAAAAATATTCTGGCTTTGCTAAATGACAGAAAGTATGCTCAAGCTAAAGTTGTTTCTATGTGGCAGCTGAAACATGTTAAAATTGATCACACATGCAAGGAAGTGGACTTTTATGGCAACATGAAAGACCATTTCCCTCTGTTTCATAAACTGGTATGTGCTGAAATGACTTGCAACCAAAAAATTCCAAATGATAGTCTCATCCATAAAGAAATACTCAGCAACTTTAATAAATTTGGTTATATAAAGGCTTTGGGAGATCCAGCAGATCCAACACTTATTCTGTTGTACTGTTTGACTTCGGAACCACTACCGTGTGTCAAAGATAAGAAGAAAAGAATCTTTGAGATTCAGTTTTTCCTACTTGGGAAGGATGAGCACATGGCTATGTGTTTCAGATTCTCCACCAATGAATGGCTGTTCTATGACAATGACCCAGCAAAGCCTTCTTTCCAGTCTTTTTCCTTTGATACAATTAAAGAGTATGTCATTTGTTTGGCCGGATACGTCAACATAACCCAAGCGCAGGAATGTAAACTTGTCATTGGTATACAGTGACtcccttttctttgtttcattctGTAGGCATTCCTGAGACTGGAGAAGGAACAGGAGCACAGCCTTTCTATTCAAGTGAAAGCACTTCCCTCTTGGATACAGAACAGTCAGTGGAGGATGTGGAAATGGAAGATCTGTCCTCTTACTCTGTACCCATTCCTGAGACTGGAGAAGGACTGGGACCACAGCCTTTCTATCAAAACTGACCAGAAGTTTCCCCCATATTCAGCCACCCAGAAAAGCCAGTGGAAGACACAGAAATGCCATAAAGTTATACCAAATCAGTGGGCATTATTGTCCATGCcctacagttttacagttttacagttttacgttttgttattttagtttgttattttcttaGTTTCCATCGGTTAGGTGGGAAGGACCCCAGGTCTGACCTCCAACTGCTGGGGGGCCTGGACCTTCCCTTTTTTATGATTTGCTGCCTTAATCATTTGTACCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484433 lncRNA upstream 249355 4406357 ~ 4406609 (+) True G408057
TU484301 lncRNA upstream 362949 4292312 ~ 4293015 (+) True G407962
TU484314 lncRNA upstream 370127 4283872 ~ 4285837 (+) True G407971
TU484298 lncRNA upstream 402057 4252893 ~ 4253907 (+) True G407959
TU483751 lncRNA upstream 769973 3869287 ~ 3885991 (+) False LOC117596542
XR_004577601.1 lncRNA downstream 6991 4666686 ~ 4668701 (+) True LOC117596517
XR_004577604.1 lncRNA downstream 9169 4668864 ~ 4679846 (+) True LOC117596549
TU484662 lncRNA downstream 354769 5014464 ~ 5016462 (+) False epha7
XR_004577679.1 lncRNA downstream 501976 5161671 ~ 5173388 (+) True LOC117596619
XR_004577680.1 lncRNA downstream 545884 5205579 ~ 5210160 (+) True LOC117596620
XM_026917877.2 mRNA upstream 1966 4647246 ~ 4653998 (+) True LOC113528978
XM_034301908.1 mRNA upstream 55107 4571554 ~ 4600857 (+) True kcnk2b
XM_034301909.1 mRNA upstream 55107 4571554 ~ 4600857 (+) False kcnk2b
XM_034302197.1 mRNA upstream 169693 4472644 ~ 4486271 (+) True smyd2b
XM_026918157.2 mRNA upstream 217411 4408481 ~ 4438553 (+) True LOC113529159
XM_026918577.2 mRNA downstream 25025 4684720 ~ 4688369 (+) True LOC113529399
XM_026918578.2 mRNA downstream 25025 4684720 ~ 4688369 (+) False LOC113529399
XM_026917469.2 mRNA downstream 30551 4690246 ~ 4697924 (+) True LOC113528767
XM_034302109.1 mRNA downstream 278803 4938498 ~ 5015074 (+) True epha7
XM_034302113.1 mRNA downstream 278803 4938498 ~ 5015074 (+) False epha7
TU483755 other upstream 774342 3876675 ~ 3881622 (+) False LOC117596542
XR_004577674.1 other upstream 905717 3672852 ~ 3750247 (+) False tab2
XR_004577675.1 other upstream 905717 3672852 ~ 3750247 (+) False tab2
XR_004577676.1 other upstream 905773 3672852 ~ 3750191 (+) False tab2
XR_004577677.1 other upstream 905773 3672852 ~ 3750191 (+) False tab2
TU485026 other downstream 1074100 5733795 ~ 5736261 (+) False lyrm2
trnag-gcc_30 other downstream 1083097 5742792 ~ 5742862 (+) True trnag-gcc_30
XR_004577658.1 other downstream 1612337 6272032 ~ 6276665 (+) True LOC117596600
TU485379 other downstream 1823406 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 1896668 6556363 ~ 6563776 (+) True G408929

Expression Profile