RNA id: XM_026918398.2


Basic Information

Item Value
RNA id XM_026918398.2
length 3699
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC113529295
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 4006743 ~ 4164910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCGCTCAGAGTCAGACTGGGTTTCATCCGCGCGCTCGTGTCACTGAGACGGACAGCGTGAAAACGTTTGTCGCGCGTCAGTAAAACAAACCCGTGTCGCAAAGGATACGAGAGTTTTAACGCCGTTTccgttttattttttatttttttcctcctcgcGGATTAAGAACGGAGCGCGCAGTGACTCTGAGGAAAGCGGGATGCTCAGGTGTCGCCGCTCTTTAAACAAACTTTCTGGCTAAGTGTTAAACACGCGCGAGACGGCGAAAGAGCGCGCGGAGGCACTTGGACTCAGACCTGACAGACACTTCCGGTGAAGCTGACAGGAATCTtggcggaaaaaaaaaagagcgcGAGACACCAAGTTTCACTCAGAGCTAAATGAAGTTTTATCATCCTGTCAGAGATGGCTGGTTTCACCAAATCTGGACCATTTTGACTAAAAACCTTAAAGCCTTAAaatgttatacatttttaaagttctAATTTGACAGGGTTTGTAGTGAATTCATATTTTATGCTGTTACAGAACTGGAAAGAAGTCCAAGTCTGCTCGGGTATAGGTGAAGAAGATAAACAGATATCATGTAGACAACGATGACAGCACCGGTATAATAATTCCTCTTACGGGTAAGAATGAAGAGTATATTTGACTGTTTGGTTTTGAAAATGTGTTAGATGAGAGTACCGGATTAGACCTGCTCTTGGAGCGGACGAATGGAAAACGCCACCCTTTCGGGATTGATATCAGGATGACACTCGGCACGTGAAAAAAACCTCAAGTGACCCGAGGACACACGCGAGATCTTACGTTAAATCCATTTTGACAAAGAGATCCAGATGTTCCAGAGTGAACGTGAATGGAGTCCTGGATATCAGCGCTGTTAAAGTTACCACGCTTTCCTTCAGGGAATAATATTTTATGTCTGAAATATCAGTCTGACTGACTTCATGAAGAAAATGCTCCATCTTGCTCTGAATGACGCATGGATCTTCTCGATCGAAGCTGAAGggtaatctgtgtgtgtatgtgtccgCTCACAGCGGCCCATACGCTGGCGCTATGCTCTAGCGCCAATATGAGAGTCTTTGTGGCGCGTTGAGCTTCTCCGTGCCAGTCCACATGCAGGCCAAGAAGCGCTACGTGCTAGCGTTGGCGGCAGCTTGCGCCATGCTGCTCGCCTACATCTGCACTCTACACACCACTGAGCTCCAGACGCACAGTGACGAGCCGCATTTTCACGCCCTTCTTCAGCATGCCGAGCAGCCATATCTGTATCTGGAGGAAGTGGAACCAGAAGAGTACGGACCACTGGTGCTGCTGCGGCGCGAGATTCAAAACAACATGTACAAGAGCCGCCGCTGTCGCATGGACACATGCTTTGACTTCGGTCGGTGTCAGGGTGCCTTCCGCGTCTATGTGTACCCACCAGGCACAAGCACGGTCACAGGAATTTCCGAGAATTACCGGAAAGTTCTGGCAGCCATTGAGGACTCGCGGTTCTACACGAGTGATCCAAGTGAGGCATGCCTTTTCGTGCTCAGTGTGGACACGCTGGACCGGGACAGGCTCTCACCACAATATGTGCAGGATGTTAGAACTCAGATCCAGAACCTTCCACTGTGGAATGATGGCAGGAACCACCTGATCTTTAACCTGTACTCTGGGACGTGGCCCGACTATGCGGAGGATTTGGGTTTTGATGTAGGTCAGGCCATGTTGGCCAAGGCCAGTGTTGACATGCAGAACTTCAGGCCCCATTTTGATGTGTCCATACCTCTTTTTTCCAAAGACCACCCCCAGAAAGGTGGGGAGAAAGGTTATTTGACATCCAACAATGTCCCTCCTGCACGGAAATACCTTTTGGTGTTCAAGGGGAAGAGATACCTTACAGGAATTGGTTCAGAAACCAGGAACGCTTTGTATCACATACATAACGGGGAAGATATGATTTTGTTGACCACCTGCAAGCACGGAAAAGACTGGGAGAAGCACAAAGATGCCAGGTGTGACCAGGACAATGAAGAATACTCAAAATTTGATTACCAGGAGCTGCTACACAACTCAACTTTCTGCCTGGTGCCTCGTGGCCGGCGACTCGGGTCTTTCCGCTTTCTTGAAGCCCTGCAGGCGGCGTGTATCCCTGTATTACTGAGTAACGGATGGGAGCTGCCTTTCTCTGAGGTCATCGACTGGAGTAAAGCCGCTATCATTGGAGATGAGAGATTACTACTGcagATTCCGTCCATCACCAGGTCTGTCGATGCGGAGCGAATCTTGGCTCTGAGACAGCAGACGCAGTTCCTGTGGGACTCCTACTTCTCCTCCGTGGATAAAATTGTCTTAACCACATTAGAGatCATCCAGGACAGGATATACACCTACACCTCGAGAAGCATGCTAATGTGGAACTCTCTCCCTGGTGGACTCTACACACTTCCTCAGTTCTCCTCATATCCCACCCTTTTCCCCTTTTACTATGGACTCctgggtaaGACTCCACAGCAGGAGTTCACAGCTGTTATTCAGGCAGTAGCTCCTCTTCAGTCTCCTCAGCAGCCCATCCTCAAACTCATCATCGCTGTTGCCAAGTCCAAATTCTGTGCtcagATCATCGTGTTGTGGAACTGTGACAAACCTTCACCTCCCAGAAGCAAATGGCCGTCCATCAGCGTCCCTCTGACCGTCAttgaggaagagagaaagACGATGAGCGGACGTTTTTTCCCTCATGATGTCATCAGGACTGATGCCGTGCTCAGCCTGGATGAGGACTCGGTTCTGTCCACGAATGAGGTGGATTTTGCCTTCACTGTGTGGCACAGTTTTCCTGAACGGATAGTCGGATATCCGGCACGCAGCCATTACTGGGACGCCACCAAAGGGAGGTGGGGCTACACGTCCAAGTGGACCAATGAGTACTCAATGGTGCTGACGGGCGCCGCCTTCTACCACAGgtactATCACTTCCTGTACACTCACTACCTGCCCAGTCGACTCCTCTCCATGGTGGACCAGCTCGCCAACTGTGAGGATATTCTCATGAACTTCCTCGTCTCCACGGTAACCAAGCTGCCGCCAATCAAAGTCACACAGAAGAAACAGTACAAGGAGACGATGATGCAACAGggTTCGAAGTCATCACGTTGGGCCGACCCGGACCACTTCGCTCAGCGCCAGTCCTGCATGAACTCCTTCGCCGCGTGGTTCGGCTTCATGCCGCTCATTCACTCTCAGCTCCGTCTGGATCCGGTTCTGTTTAAAGACCAGGTCTCCATCTTACGCAAGAAATACAGAGACATCGAGAGACTGTAGAGACGCATGACACGGCCTCGGAGCCCTCGTATCAACCCAAATGTCTTGAATCTATGGACACTTTTTTTATGAGTGATGTGCTGATTGGCCTGGACCTGGCCTCACAAATATAATGTCTGCAaagtaatttcatttaaaatatatgcaaCTCCGGGTTTTATCTTGTTTAGCGGCTCTGGTTGGGTATCTGCGAATCCAGCACTGCTGActtttcatcctcatcttcatcatcatttgcAGAGACCGCTGTTACTCCTAGGACATACTCGGAGGAAGGAAAGACGGCCTGAAGTCGAGGCCATGGGGAGGACGCCCAAACTCACACCAATGCCTGCAATATGTACATTCAGTTCCCTTATTTTTTGTAcgattttgccttttt

Function

GO: NA

KEGG:

id description
K02366 EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483751 lncRNA upstream 120752 3869287 ~ 3885991 (+) False LOC117596542
XR_004577667.1 lncRNA upstream 134882 3870959 ~ 3871861 (+) True LOC117596607
TU483758 lncRNA upstream 155320 3843685 ~ 3851423 (+) False LOC113528760
TU483705 lncRNA upstream 263077 3743413 ~ 3743666 (+) True G407506
TU483698 lncRNA upstream 281483 3722887 ~ 3725260 (+) True G407499
TU484298 lncRNA downstream 87983 4252893 ~ 4253907 (+) True G407959
TU484314 lncRNA downstream 118962 4283872 ~ 4285837 (+) True G407971
TU484301 lncRNA downstream 127402 4292312 ~ 4293015 (+) True G407962
TU484433 lncRNA downstream 241447 4406357 ~ 4406609 (+) True G408057
XR_004577601.1 lncRNA downstream 501776 4666686 ~ 4668701 (+) True LOC117596517
XM_034302095.1 mRNA upstream 66568 3934414 ~ 3940175 (+) False LOC117596606
XM_034302096.1 mRNA upstream 66569 3934696 ~ 3940174 (+) True LOC117596606
XM_034302097.1 mRNA upstream 66572 3934417 ~ 3940171 (+) False LOC117596606
XM_034301887.1 mRNA upstream 72508 3876681 ~ 3934235 (+) True LOC117596542
XM_034301886.1 mRNA upstream 143263 3811890 ~ 3863480 (+) True LOC113528760
XM_026918104.2 mRNA downstream 39160 4204070 ~ 4207982 (+) True c30h1orf131
XM_026918520.2 mRNA downstream 76274 4241184 ~ 4244611 (+) True LOC113529367
XM_026918507.2 mRNA downstream 82832 4247742 ~ 4252589 (+) True fam89a
XM_034302177.1 mRNA downstream 94289 4259199 ~ 4277163 (+) True ttc13
XM_034302094.1 mRNA downstream 130414 4295324 ~ 4330997 (+) True rps6kc1
TU483755 other upstream 125121 3876675 ~ 3881622 (+) False LOC117596542
XR_004577675.1 other upstream 256496 3672852 ~ 3750247 (+) False tab2
XR_004577669.1 other downstream 491054 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other downstream 491054 4655964 ~ 4659695 (+) False LOC113529331
TU485026 other downstream 1568885 5733795 ~ 5736261 (+) False lyrm2
trnag-gcc_30 other downstream 1577882 5742792 ~ 5742862 (+) True trnag-gcc_30
XR_004577658.1 other downstream 2107122 6272032 ~ 6276665 (+) True LOC117596600

Expression Profile