Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000065 |
| length | 664 |
| lncRNA type | retained_intron |
| GC content | 0.38 |
| exon number | 2 |
| gene id | XLOC_000035 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 1689775 ~ 1706159 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006883 | cellular sodium ion homeostasis | biological_process |
| GO:1902600 | proton transmembrane transport | biological_process |
| GO:0036376 | sodium ion export across plasma membrane | biological_process |
| GO:0030007 | cellular potassium ion homeostasis | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006813 | potassium ion transport | biological_process |
| GO:1990573 | potassium ion import across plasma membrane | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005391 | sodium | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0008556 | potassium transmembrane transporter activity, phosphorylative mechanism | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-001212-4 | Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1). |
| ensembl_id | ENSDART00000123205 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000064 | lncRNA | upstream | 14105 | 1690047 ~ 1691025 (+) | False | XLOC_000035 |
| TCONS_00003014 | lncRNA | upstream | 85816 | 1617203 ~ 1619314 (+) | False | XLOC_000034 |
| TCONS_00003013 | lncRNA | upstream | 85816 | 1617203 ~ 1619314 (+) | False | XLOC_000034 |
| TCONS_00003012 | lncRNA | upstream | 85816 | 1617203 ~ 1619314 (+) | True | XLOC_000034 |
| TCONS_00002807 | lncRNA | upstream | 126879 | 1571847 ~ 1578251 (+) | False | XLOC_000032 |
| TCONS_00000071 | lncRNA | downstream | 24512 | 1730392 ~ 1731484 (+) | False | XLOC_000036 |
| TCONS_00000073 | lncRNA | downstream | 84892 | 1790772 ~ 1792523 (+) | True | XLOC_000036 |
| TCONS_00000077 | lncRNA | downstream | 193029 | 1898909 ~ 1899843 (+) | True | XLOC_000039 |
| TCONS_00003015 | lncRNA | downstream | 295836 | 2001716 ~ 2005632 (+) | True | XLOC_000043 |
| TCONS_00002808 | lncRNA | downstream | 317529 | 2023409 ~ 2023645 (+) | True | XLOC_000044 |
| TCONS_00000062 | mRNA | upstream | 90630 | 1599979 ~ 1614500 (+) | True | XLOC_000033 |
| TCONS_00000059 | mRNA | upstream | 734179 | 961607 ~ 970951 (+) | True | XLOC_000027 |
| TCONS_00000058 | mRNA | upstream | 1096883 | 604127 ~ 608247 (+) | True | XLOC_000025 |
| TCONS_00000057 | mRNA | upstream | 1097075 | 594736 ~ 608055 (+) | False | XLOC_000025 |
| TCONS_00000056 | mRNA | upstream | 1101733 | 594584 ~ 603397 (+) | False | XLOC_000025 |
| TCONS_00000066 | mRNA | downstream | 6260 | 1712140 ~ 1731564 (+) | False | XLOC_000036 |
| TCONS_00000072 | mRNA | downstream | 83477 | 1789357 ~ 1796832 (+) | False | XLOC_000036 |
| TCONS_00000074 | mRNA | downstream | 99414 | 1805294 ~ 1815660 (+) | True | XLOC_000037 |
| TCONS_00000075 | mRNA | downstream | 132284 | 1838164 ~ 1850104 (+) | True | XLOC_000038 |
| TCONS_00000076 | mRNA | downstream | 190857 | 1896737 ~ 1899848 (+) | False | XLOC_000039 |
| TCONS_00000061 | other | upstream | 129567 | 1575483 ~ 1575563 (+) | True | XLOC_000032 |
| TCONS_00000060 | other | upstream | 486325 | 1218691 ~ 1218805 (+) | True | XLOC_000029 |
| TCONS_00000053 | other | upstream | 1128609 | 576444 ~ 576521 (+) | True | XLOC_000024 |
| TCONS_00000052 | other | upstream | 1158913 | 537589 ~ 546217 (+) | False | XLOC_000023 |
| TCONS_00000047 | other | upstream | 1189808 | 514013 ~ 515322 (+) | True | XLOC_000021 |
| TCONS_00000067 | other | downstream | 6273 | 1712153 ~ 1718527 (+) | False | XLOC_000036 |
| TCONS_00000068 | other | downstream | 11817 | 1717697 ~ 1723157 (+) | False | XLOC_000036 |
| TCONS_00000069 | other | downstream | 12731 | 1718611 ~ 1793371 (+) | False | XLOC_000036 |
| TCONS_00000070 | other | downstream | 13327 | 1719207 ~ 1732326 (+) | False | XLOC_000036 |
| TCONS_00000094 | other | downstream | 484820 | 2190700 ~ 2214397 (+) | False | XLOC_000046 |
