RNA id: AMCG00000220


Basic Information

Item Value
RNA id AMCG00000220
length 4657
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00000220
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 7690570 ~ 7697131 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGCCCCTTTGTGGTGGCTGTGGGTGCAGATGTCGGCTCTTCTCTCGTTATTGTGGGCCATCCAGTCATGTGACAGCGGCAGTCAGCTGATTGCAATTGTACTGTCATTCAATTACAAACCCGGAGCCTTTTGCAAGATGAATATACAGCATTAGAGCCGCACAGACTGCACGGTTGTGgatgtgtttaatattattttaagtcgCGGTTCTCATTTATGAATCCAAACAAGCAGACCAGTTGCACAAGCGCGTTATCGGCGTGCAAGCGAAACTGCGGCGAAAGAGGAACTACTGACTAGTGGGGTATGCCATTATAATTTCGGCCTCAGTGAAGAGTAGGCTCGGTGtttatagtttgtatttgtacatCTGCAAAAGCCATGGCTTCAATACTGGACGAATATGAGGACTCCCAGAGCATCCGGCACCCAGTGCAGCAGCACGCCCGTCTCTCTGCCTCCAACATCGGCATTACGCATTCAGGTTTTGTGAGTGCTAGGCTGGAAGAAGAGAAGCCAATATTTAACAAGCAAAGAATTGACTTTTCCCCTCCTGAGAAGATCAACCACTTTGCAGTCTGCAACAACCAGCTGTGCATGAGTCTGGGCAAAGACACTCTGCTGAGGATTGATCTTGGAAAGCCTGATCAACCCAATCAGGTTGAACTTGGACGTAAAGATGAAACTAAAGTACACAGGCTGTTCCTTGACCCTACAGGTTCCCACCTGGTAATCAGTCTCCTGTCAAACGAGTGCCTGTACCTCAATAGAAACACCCCGAAGGTCCGGAGTTTGTCTCGCTGGAAGGGGCACCTCATTGAGAGTATTGGCTGGAATAAATTGCTGGGTAATGAGACCAACACAGGCCCCATTCTAGTCGGCACTAACCAGGGGCAGATCTACGAGGCTGAGATTTCGGCATCGGAAGGAAGCCTATTTAACACCAATCCAGACCAGTATTTACGTTTGGTGCACACCTTAGAAGAAGATGGCAAGCCCGCCCCGGTTTGTTGCCTGGAGATTGAGCGTGGGATCGAGTCAAAGTTTTTCATTATCGCCACCACGAGGAAGCGGCTGTTTCAGTTTGTGGGAAAAGTGGCCGAAGGTGCCGAGCAGCAGGGCTTCAGCTCTATTTTCAACCAAACTCAGGAGCATTTCCCCAGCTTCCAGGAGTTCCCTGCCAATCTGGGATACAGCGAGATTGCTTTTTACACTTCCAAGCTCCGCACGTCCCCCAAGTCGTTTGCGTGGATGATGGGGAACGGCGTCCTATATGGGAATCTGGACTACGTCCGTCCGGATTCTCTACTGAGTGACGTCCAAGTTTGGGAATATACTGCTGATATTGACTTTAACTTCAACAAGCCCATATCCATCGTCCTGACGCAGTTCCATTTCCTCCTACTCCTGCCAGATCGCGTGAAGGCCGTCTGCACTTTAAATGGACAAGTCGTGTATGAAGATGTATTTCCTGATAAATTTGGCGCCTTGAAGAAGATGATCAAAGACCCAGCTGGTGGATTGGTGTGGATATACACAGAGAAAGCTGTTTTCCGCTACCACATTCAGAGGGAGGCACGTGATGTGTGGCAGATGTATATGAGCATGAATAAGTTTGACTTGGCAAAAGAGTATTGCAGGGACAGGCCGGAGTGTCTGGACACTGTCTTGGCCAAAGAAGCAGAGCACTGCTTCCAGAATAAGAAATATTTGGAGAGTGCCAAGTGCTATGCTCTCACACAGAACTATTTTGAGGAGATCGCCTTGAAGTTTATTGAAGCTAAACAGGAGGATGCACTCAAGGAGTTCCTGATTAAGAAACTCAATAATCTGAAGTCCAGTGAGAGAACACAAATCACCCTATTGGTCACCTGGCTGACAGAACTCTACCTCAACAGACTGGGTGTCTTGGAATGTGATGAATCACAACGTGCGCTTTTCTTGGAAATGAGAGAAGAATTTCGGCGGTTCCTTAACAGCTCCAAAAACAAAGATTGTCTGTACAATAACAGAACGACAATTTATGATCTTCTGGCCAGCCATGGCAACGTGGAGGACATGGTCTACTTCTCTGTCATCATGCAGGACTACGAGCGAGTCATCTCCCACCACTGCCAGCATGACAACTACGAGGCAGCCCTGGAGGTGCTGTCTAAGAATCGGGATGAGAAGCTCTTCTACAAGTTCTCCCCAGTTCTGATGCAACACATCCCAAAGAAAGTGGTTGACGCTTGGATCCAGATGGGGAACAAACTAGACGCCAAAAAGCTCATCCCAGCTCTGGTCAACTACAGCCAGATTGGCAGCACACAGCAGATAAACGAGACAATTCGTTACATGGAGTTTTGCGTGTATGAGCTGACTGTGACCGAAGAGGCCATACACAATTACCTCCTGTCCCTCTATGCTAAGTACAGACCAGACTCTTTGCTGTGGTACCTCGAGCAGGCTGGGACACACTCCTCGGACATTCACTATGACCTTAAGTACGCCCTACGCTTGTGTGCAGAGCATGGGCATCGCAGGGCATGCGTTCTTGTTTATAAGATAATGGAGCTGTTTGAAGAGGCTGTGGATCTGGCACTGCAAGTGGATGTGGACCTGGCAAAGTCGTGTGCCGACCTGCCGGAGGATGACGAGGAGCTGAGGAAAAAGCTGTGGCTGAAGATCGCCCGCCATGTTGTGCAGGAGGAGAAAGATGTCAAAAAGGCCATGAACTGCCTGTCCAGCTGCAACCTGCTCAAGATCGAAGACATTTTGCCGTTCTTCCCTGACTTTGTCACCATCGACCACTTCAAGGAGGCCATCTGCAACTCCCTGGAGGAGTACAACAAGCACATTGAGGAGTTGAAGCAGGAGATGGAGGAGGCCACGGAGAGTGCCAAGCGCATACGAGAGGACATCCAGGAGATGAGGAGCAAGTATGGCGTGGTGGAGTCCCAGGAAAAGTGTGCTGCCTGCGATTTCCCACTCCTCAACCGGCCCTTCTACCTCTTCCTGTGCAGCCACATGTTCCACTACGACTGCCTCTTTCAGGAGGTCAGCCCTCACCTGTCCACCTACAAGCAGGCCAAACTGGAGGAGCTCCAGAAAAAGCTTTCGGCCACCGCCCAGCCCACCAAGTCCAGGCATCGGCAGAAGGAGGAGGACAGCATCAGCCTGGGCAAAGGGCAGCAGAGTCGGGAGCAGATCAAATCGGACATTGACGACATCATTGCCGGCGAGTGCGTGTACTGCGGGGAGCTGATGATCAAGTCCATTGACAAGCCTTTCATTGACCCACAGAAGTATGAGGAGGAGAAATCCAGCTGGCTGTAAAGGACTGAGAATGTGTTGGAATTTGTTATGTAGGTAAAAGACTGGAGATGGTAAAGCTCTGCTAATTAACCTAGTAAAAAGGTATGTCCTCCGAATGCAGTGTGCAGTTACGGGTGAAAACTAGACAGTGTTGTATCTGATCTGTTCACCAGGAGGGCTACGTCTGCACTGTATGTAAATCCAACTCTTGATTGTATGTGAATATCAACAGTTGACTGACTATCTATGCTCTGTAATGGCTTTGTGTGGCACTCCCTTTACCATTCTGCTTTCCGGTTTTCAGCTTTGGTGTAcagtgtgctttatttttattcagtggAGCCCATTTTTCTTCTCTGCCTCTTTCAGTTCACCATTTTATTCTCGATTCCCCTAAACAATGGCTACAAAGAACACTTTCCTCATACCTAAAATGCCTGTTGCCTTGCAAGTGCCACCATTTTGAAGTGACTACCAATTCTAACCAAACCTGAATTTTATCAAGTGACTTAGTATTCGACTGCACATCctatcattttttctttttaaagtgtatttaattCTACACTGTAACCCATCACATTACCAAACTCTAACTCTAAACGGACCTTTCAGTTTCCCTGCTAATCTGGATGACCTGTGAGCGCTTTCGACTGTAATTATGCAATTTTACTTCCGGAACCCGCTTTATACGTGAACATATGTGTACATTTAACTTGGGTATTTATTTAGTCTTAATTACATCATATAGATTGTGAATCAAAGCCCTGAGACTGATGTTTACTTGCAAAAAGGCCTGTCTTATGAAATGTGCTTTGTTCCCAGCACTCTTTTTAGATCAAACATTGTCAGTTTTAATtgttggaaaaataacaaaacgtCTGTATCAGCTACAAATTTGATTAACCTTGCCAAATAAAGAACACCCTACTGCTTGGTAATTAACTCTTCtgttattatgttttcatggaaaaacTATAATTTACCTGGTTActcatacattttgtaagtgaAAAGCTTTTACAGaatcttgatttgttttatcaCTGTGAACAGTGTTATTCCCTTCATATAGAATAAAAGTACAGAATTCTCCTTTTATAGTACTCTTGctttctgtgcattttgtaatgctAAGCTTCttgtacaaatgtgttaatCTGTTGCTCATAGTTTGTGTACAAAGGGAGTTATAATGAATATTCTGTGAAAGGCATCACTATCAATTTAAAAGAATATTGCCAAGACTGCTATAAAACTAATTgtcatttaagtaatttgttcaatggtaatttaatttgtatgtttctcCAAAAGGCGTAATTAAGATTAAATCAGAACATTGATCTAACATCCCAG

Function

GO: NA

KEGG:

id description
K20181 VPS18, PEP3; vacuolar protein sorting-associated protein 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187384 lncRNA upstream 6473 7683878 ~ 7684097 (+) True G148919
TU187283 lncRNA upstream 366119 7313907 ~ 7324451 (+) True AMCG00000215
TU187229 lncRNA upstream 598110 7092025 ~ 7092460 (+) True G148791
TU187204 lncRNA upstream 755410 6933300 ~ 6935160 (+) True G148768
TU187198 lncRNA upstream 763316 6923294 ~ 6927254 (+) True G148764
TU187435 lncRNA downstream 62238 7759369 ~ 7759597 (+) True G148961
TU187484 lncRNA downstream 258841 7955972 ~ 7956389 (+) True G149001
TU187549 lncRNA downstream 875805 8572936 ~ 8575124 (+) True AMCG00000251
TU187552 lncRNA downstream 886517 8583648 ~ 8584007 (+) True G149055
TU187553 lncRNA downstream 887357 8584488 ~ 8584967 (+) True G149056
AMCG00000235 mRNA upstream 16003 7663322 ~ 7674567 (+) True AMCG00000235
AMCG00000233 mRNA upstream 37242 7643721 ~ 7653328 (+) True AMCG00000233
AMCG00000234 mRNA upstream 121977 7554088 ~ 7568593 (+) True AMCG00000234
AMCG00000211 mRNA upstream 229767 7435285 ~ 7460803 (+) True AMCG00000211
AMCG00000217 mRNA upstream 328154 7361243 ~ 7362416 (+) False AMCG00000217
AMCG00000221 mRNA downstream 5688 7702819 ~ 7740807 (+) True AMCG00000221
AMCG00000238 mRNA downstream 174399 7871530 ~ 7886444 (+) True AMCG00000238
AMCG00000232 mRNA downstream 411487 8108618 ~ 8120105 (+) True AMCG00000232
AMCG00000247 mRNA downstream 727453 8424584 ~ 8426636 (+) True AMCG00000247
AMCG00000248 mRNA downstream 745172 8442303 ~ 8457288 (+) True AMCG00000248
TU187300 other upstream 327863 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 327863 7361020 ~ 7362707 (+) True AMCG00000217
TU187266 other upstream 393906 7290666 ~ 7296664 (+) False AMCG00000216
TU187550 other downstream 882586 8579717 ~ 8581112 (+) False AMCG00000249
TU188032 other downstream 2272193 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 2837459 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 4285329 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 4982539 12679670 ~ 12727903 (+) True G149859

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035739 True 3544 mRNA 0.46 5 NC_007131.7 28354269 ~ 28361574 (-)