RNA id: AMCG00001535


Basic Information

Item Value
RNA id AMCG00001535
length 804
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00001535
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7300190 ~ 7305321 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCTGGAGATGTATTGGTGATCGTCACGGCCCGGGTGTTGAAAGTCCTTTCTGCCTCTTGTTATTGTCCTCCACACCACAAGGAGAAGAAAGGAGTGGGCGTAGCGTGCCGTGCTGACAGCGCCGAGCTGGCTGTTCCTCTCGGAGCCCTGCTGGGGGACGCAGTGCTGGTGGAGCCACAGGCTTTCTCACAGCCAGCACTGCCAAGGGGCCGCTCTTCTGAGCAGCAGCCCCGCCACATGGCCGGCAGAGCGGGCCGGCTCCTTCCCGGAAGGCTAGCCACTGTCCCTATGGCTTTGGAACAGGGGGTGCTGGAGGACAACGACTACGGCCGGGCGGTGGACTGGTGGGGGCTAGGCGTGGTGATGTATGAGATGATGTGCGGCCGGCTGCCCTTCTACAACCAGGACCACGAGAAGCTCTTTGAACTCATCCTAATGGAGGATATTAAATTCCCCAGGACACTGTCCAGCGATGCAAAATCACTACTGTCGGGCCTCCTCATCAAGGACCCCAACAAAAGACTTGGCGGTGGTCCAGATGATGCAAAAGAAATCATGCGCCACAGTTTTTTCGCAGGAATAAACTGGCAAGATGTGTATGATAAAAAGCTGATACCTCCTTTTAAGCCTCAGGTGTCCTCGGAGACAGATACCAGATATTTCGATGAAGAATTCACAGCCCAGACGATTACAATAACTCCTCCTGAAAAATTTGATGAAGACGGCATGGACTGCATGGACAACGAGCGGCGGCCCCACTTCCCTCAGTTCTCGTACTCCGCCAGCGGCCGGGAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199643 lncRNA upstream 130423 7169533 ~ 7169767 (+) True G158571
TU199625 lncRNA upstream 139581 7158250 ~ 7160609 (+) True G158555
TU199613 lncRNA upstream 244129 7055848 ~ 7056061 (+) True G158548
TU199603 lncRNA upstream 264124 7028187 ~ 7036066 (+) True G158539
TU199470 lncRNA upstream 511218 6787404 ~ 6788972 (+) True G158435
TU199652 lncRNA downstream 6823 7312144 ~ 7313758 (+) True G158580
TU199706 lncRNA downstream 269593 7574914 ~ 7575132 (+) True G158621
TU199723 lncRNA downstream 356263 7661584 ~ 7664572 (+) True G158631
TU199773 lncRNA downstream 422229 7727550 ~ 7728815 (+) True G158667
TU199774 lncRNA downstream 424232 7729553 ~ 7731701 (+) True G158668
AMCG00001536 mRNA upstream 3586 7270418 ~ 7296604 (+) True AMCG00001536
AMCG00001542 mRNA upstream 167175 7112652 ~ 7133015 (+) True AMCG00001542
AMCG00001541 mRNA upstream 279372 7016929 ~ 7020818 (+) True AMCG00001541
AMCG00001532 mRNA upstream 284853 7011905 ~ 7015337 (+) True AMCG00001532
AMCG00001531 mRNA upstream 289475 7000441 ~ 7010715 (+) True AMCG00001531
AMCG00001539 mRNA downstream 86752 7392073 ~ 7410053 (+) True AMCG00001539
AMCG00001540 mRNA downstream 116489 7421810 ~ 7452801 (+) True AMCG00001540
AMCG00001548 mRNA downstream 225625 7530946 ~ 7549993 (+) True AMCG00001548
AMCG00001550 mRNA downstream 370764 7676085 ~ 7679777 (+) False AMCG00001550
AMCG00001559 mRNA downstream 381063 7686384 ~ 7688398 (+) True AMCG00001559
TU199601 other upstream 272049 7023388 ~ 7028141 (+) True G158537
TU199525 other upstream 423612 6874768 ~ 6876578 (+) True G158478
TU199345 other upstream 904230 6394103 ~ 6395960 (+) True AMCG00001509
TU199235 other upstream 1399192 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 1429040 5870719 ~ 5871150 (+) False AMCG00001489
TU199730 other downstream 365993 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 365993 7671314 ~ 7679783 (+) False AMCG00001550
TU199779 other downstream 431194 7736515 ~ 7737890 (+) True G158672
TU199783 other downstream 441360 7746681 ~ 7746980 (+) True G158676
TU199853 other downstream 627835 7933156 ~ 7933555 (+) True G158725

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_09251775_09267204.mRNA True 2789 mRNA 0.49 12 CI01180000 9251072 ~ 9267256 (+)