RNA id: AMCG00002278


Basic Information

Item Value
RNA id AMCG00002278
length 2592
RNA type mRNA
GC content 0.56
exon number 17
gene id AMCG00002278
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9951006 ~ 9971665 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAGTGGGTGACTGTCACAGCTGTGCTGTCTCTGGGCTCTCTGCTGCCAATTTCTGTTTGTTCAGGGCTGGGTGCTCTGCTGACGAATCGTGTGCTGGCAGGAAGTGAAATCTGCGGATTTCGGATTCACGGGCAAAATGTTCCCTTCGAGGCCGTGGTCCTGGACAAGACCACGGGAGAGGGGGTTATCCGGGCCAAAGACAAACTGGACTGTGAACTGCAGAAGGAGCATACGTTCACCATCCAGGCCTTCGACTGTGGAGAGGGGGCAGATGGGACCAACATGAAGAAATCGCACAAATTCCTGGGATTTGTGGATTTTCGCAAATGTTATAGAGTTATTATTGACGAGAAATCTTACAAGGCTACTGTCATCGAGGGGAAGAAGTACGACAACATCCTGAAGGTGGAGGCGGTGGACGCTGACTGCTCCTTCCAGTTCAGCCAGATCTGCAGCTATGAGATTGTCACCCCCGACGTACCGTTCACCATTGACAAAGACGGATTCATTAAGAACACAGAGAAACTGAACTACAGCAAGGATCGCCAGTACAAACTAACAGTCACTGCCTACGACTGCGGCAAGAACCGGGCTTCTGAAGACGTCCTTGTCAAAATCAGCATCAAACCCACCTGCAAACCAGGCTGGCAAGGCTGGAGTAAAAGGATGGAGTATGAGCCTGGGACAGGAAGCCTAGCATtgtttcccagcatgcacttgGAAACCTGCGAGGAGCCAATCACCTCCATCCAGGCCAATATTGAACTGGAGACCAACCACATTGGGAAAGGCTGCGACAGAGACACCTACTCCGAAAAGTCTCTGCACAGATTGTGTGGAGCCAGCTCGGGCACGGTTGAGCTCTTGCCCGCCCCCAGCAGTACGGCGAACTGGACAGTGGGGCTCCCTACGGACAACGGCCATGACAGTGACCAGGTCTTTGAGTTCAATGGCACACAGGCTATTAAGATCCCAGAGGGAGTGGTGAGCACCAGCTTTAAGGAGCCCTTCACAGTCTCTGTGTGGATGCGGCATGGCCCTGGCGCCAGGGAGAAGGAGACTGTGCTCTGCAACTCTGACAAAACAGAGATGAACCGACACCACTACTCACTATACGTGCACAACTGCCGCCTAGTCTTCCTGTTCCGCCAGGACCCTGCAGAGGCCGAGAACTACAAACCCGCCGAGTTCCACTGGAAGCTCGACCAGGTGTGTGATAAAGAGTGGCACCACTACGTCCTGAACATCGAGTTCCCCACTGTGGCTCTCTATGTAGATGGAGTCTCATACGACCCGTTTCTCGTCACCGAAGACTACCCCCTGCACGCCTCGAAGATTGAGACTCAGCTCACCGTGGGAGCCTGCTGGCAAGGAGGCAGTCTGCGCATGACCCAGTTCTTCCGAGGAAACCTGGCCGGTCTGATGATCCGGTCAGGCAAGTTGGAGAACAAGAAGGTGATTGACTGTCTGTACACCTGCAAAGAAGGCCTGGACATGCAGCTCCCGGATGAAGTGGCCAGTGGAATCAAGGTACAGTTCAACCCCAGCCAGTCTTCTCTGGTGATGGAAGGAGACGACATCGAGAGCTTTGACAAGGCCATGCAGCACATCTCCTACCTCAACTCCAGACAATTCCCCACGCCCGGTATCCGCAGGCTCAAAATCTCCACCACCGTCAAGTGCTTCAATGAGGAGACCTGCATCTCTGTGCCAGACGCTGAGGGCTACGTGATGGTCCTGCAGCCCGAGGAGCCCAAGATCAGCATCAGCGGCATCGACCACTTTGCCCGCGCCGCCTCGGAGTTCGAGAGCGGGGAGGGTGTCACCCTGTTCCCAGAGCTGCGCATCGTCAGCACCATTACCCGCGAGGTGGAGTCTGAGGGAGAGGGCGAGGACGATCCCACAGTCCAAGAGTCGGTGGTGTCCGAGGAAATCATGCACAACCTGGACACCTGTGAGGTGACTGTGATCGGGGAGGAGCTGAACGCCGAGCAGGAGAGCATGGAGGTGGACCTGGCGCTCATCCAGCAGAGAGGAATGGAGATGAGCAGCTCCAATCTGGGCATGATCATCACAGGTGTGGACACCATGGCCAACTACGAGCAGGTCCTGCACCTGATTCGCTACAGGAACTGGCATGCCGAGTCGCTGTTCGACAGGAAGTTCAAGCTGGTCTGCTCAGAGCTGAATGGTCGCTACATCAGCAATGACTTCAAGGTTGAGGTGAACGTGATTCACACGGCCAACCCAGTGGACCATCCCAACAACGCCATGGCCCAGCCTCAGTTCATCAACCCAGTGCACCACGCCTCTGTCGACCTCTCTGGGCACAACCTGGTCAACGCACATCAGGCATCAGTGGTCCCCAGCGCCGCCACCGTCGTGATCGTGGTGTGTGTCAGCTTCCTGGTCTTCATGATCATCCTGGGTGTTTTCCGCATCCGGGCGGCCCACCAGCGCAGCGTGCGGGACCAAGAGAGTGGCAAGGAGAACGAGATGGACTGGGACGACTCCGCCCTCACCATCACCCAGAGCGGCAGcaggcagcagcagctggaGTGGGACGACTCCACGCTCACCTACTGA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K22659 CLSTN1; calsyntenin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153135 lncRNA upstream 52126 9862956 ~ 9898880 (+) True G122126
TU153132 lncRNA upstream 101994 9844280 ~ 9849012 (+) False AMCG00002272
TU153125 lncRNA upstream 120328 9829754 ~ 9830678 (+) True G122119
TU153071 lncRNA upstream 191945 9693716 ~ 9759061 (+) True G122086
TU153035 lncRNA upstream 322173 9628598 ~ 9628833 (+) True G122063
TU153225 lncRNA downstream 108082 10079747 ~ 10132200 (+) True G122198
TU153270 lncRNA downstream 351864 10323529 ~ 10326651 (+) True G122236
TU153350 lncRNA downstream 781013 10752678 ~ 10753881 (+) False AMCG00002296
TU153390 lncRNA downstream 899108 10870773 ~ 10927943 (+) True G122328
TU153467 lncRNA downstream 1363266 11334931 ~ 11348638 (+) True G122389
AMCG00002273 mRNA upstream 76912 9873347 ~ 9874094 (+) True AMCG00002273
AMCG00002274 mRNA upstream 87917 9853550 ~ 9863089 (+) True AMCG00002274
AMCG00002272 mRNA upstream 99694 9844205 ~ 9851312 (+) True AMCG00002272
AMCG00002266 mRNA upstream 295248 9654733 ~ 9655758 (+) True AMCG00002266
AMCG00002264 mRNA upstream 326312 9619457 ~ 9624694 (+) True AMCG00002264
AMCG00002287 mRNA downstream 329642 10301307 ~ 10304361 (+) True AMCG00002287
AMCG00002290 mRNA downstream 394484 10366149 ~ 10376762 (+) True AMCG00002290
AMCG00002289 mRNA downstream 412760 10384425 ~ 10392661 (+) True AMCG00002289
AMCG00002291 mRNA downstream 427996 10399661 ~ 10425473 (+) True AMCG00002291
AMCG00002293 mRNA downstream 485659 10457324 ~ 10541658 (+) True AMCG00002293
TU153130 other upstream 99700 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 101994 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 1188927 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 2554445 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3348398 6586654 ~ 6602608 (+) False AMCG00002190
TU153306 other downstream 596247 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 1405275 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1657347 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 1716935 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1863774 11835439 ~ 11836169 (+) True G122582

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044267 False 2895 mRNA 0.53 18 NC_007134.7 29583822 ~ 29667544 (-)
grasscarp (Ctenopharyngodon idella) CI01000001_11822308_11849165.mRNA True 3092 mRNA 0.50 17 CI01000001 11822018 ~ 11849165 (-)