RNA id: TU153130


Basic Information

Item Value
RNA id TU153130
length 2215
RNA type TUCP
GC content 0.42
exon number 7
gene id AMCG00002272
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9844205 ~ 9851312 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTTCTGCTGGACCGCCTCGTTTCGTGTTTCTAGAAGGAATTCCATTCGAGGGATTGGTGCGTTCGCCTGTTCATACATCCCAGTTTCCCACTCACAGATGTCCAACATGTTTCGTATAGTCGCTCAATCCGTTGCAGTATTTCTGTTAGTTTTCGTTATTTTAACAAACTGGGTATTTGTAAAAAGTGCGGAAGCGGTCAACGGGGCGTACAGGAGAATCTGCAAATAGAATCGCAACACAGCAACGACAACAGACCTTCTCTGCAAAGTCAAATTATTGTGGTGACTTTTGTGACGATCGTTCTTGTCCCTCAACTATACGTTCTAATAAGACCCAAATCAGCCCGATTCTGCCAAAAACCTCTTCTGGGTAACCTGACATGTTCTATAGCCCTCACATTCATGGCATCAGGGTTTGCGGTGGTGCTAACGCTAAAGGATCCTATCCCTCAGGCCCTTAAAGCAGCTTTCCATGCTTTCGGAGTGGCTTCCTTCACGGCGGGGTTGTGCACCACTGTCCTCACTGCCAGCGCAGCTCCGTGTgcAAAAACAACTCCTGAACTATACTACCTATCCTTAATGCTATCAGTGGGTAGTATGCTGGCTACAGGGTTTTTCATGGCCATGGGGGGTTTCTGGGCTGTTAATCAGCTGTATCCCTGGTCAGTGTTGAACCTGCGCTCCAGGACTGGGGTTTGCCTTGAGCCCGTCAGCAGCTGCTCCTGTCTCTGGCACATCTGACCGCACATCTGACCTCTCACCGCATCACAGCCCCATCATACTGTGAGCCTTCTCTCCATGGCAACCCCCTAGCAACCAGGGCAGGCTGGAAAATTCCACCTGTGATCACCGAGCTAGAGAACGGCACGGCTCCTCAGCAGAGCGGCTTGACAAGATGCACGCCAGCTATTAATTATTCACCCATTCTGCAATACAGACTGCCTTAGATTTAAGTCAGATCCTAAGATGCATCTTTCAAGCCACAAAAACAGAGAGACTTCTGGAAGGGGTTCAACCAAGTGGCTGTTTTGTATTCTGTAGATATTATACAGCAGCTGCAGACTAGAAGGAAAGTGCAGTAGGTTGGTGCCTAAATGCAATCGCAAAACGTGCCTCCTTTTAGACTTAAATCAAAGGAACGCCCAGGCATTCTTATCATGAAACCGCCATGCTGATAGGACACAATGTGCATGTGTTCCCTCAGTCTCACGCCTGAAGTTTGATTTCATGAGAGTGGTTTGTTGTGACAAATTAAGATAACGGTGCTTCCACGAGTTGAGCTCTGGGGAATATCTTACGTTTTATTTCAATTGCCAAACAGCATTTCAGTTTAGCTACTGTCACCACTGCACAGCTGATAACTTACTCCTGGTAAATGATCTCTGCACATGAAGTTGAGGTAGAAGAACTGAGATGGGCATCTTGCAGGTGTGCTCGTGTCTCTCAAAATATTCCTTTCTCAGTTTTCTATGTAGCATAGAAATTATGATTCACTTTGAAACTTGAATGGAAAATAGTGAGTTTCTATAAAACCTGATGAATTCTATTGAATCATATCTCAGGAATTGTTCAAGGTAAACctactgtttttatgtttttttatctaTATACGGCAAGACACACCAATGCCCTTAAAATAATCTCTCCACTGCCACACAATATGGTAAAGACTGACAATTTCCTCCCTGGGCACTCTAcattccagaaaacaaaaaagcattccAGTTCAGTCTTCTTTAAACTTACAGATAAAATACATAGCATACACTTGCAGGTTTTCTACTATTCAAGAGtctaaaagtattttgaaataacacattttgtatttttgttttctttttttgggacGATAAAGATCAAATGTATAGCACTGACTTTATTGAGGACCAAAACTACTTGTATTTATACAGATCTAACCTTTTATTACAATAGTATTTTAGCCGAgtgctttgtttgtttacaaaatgACTGTTACTGAATAACTATATTAACTGCTTCCAAATGACACACCACTGAAAAAGTAGTATCGATGGAGTAAcctaaatacttattttgtatgtCACAATAAATCCTCAGTAttactgttgtttgttttgctgttgcttctgtacagtgtaaaataaaattgtttagaCCATACTGTTTACCAGCACCCAAGATCTTTTCTTGGGTGTCTTTTTCCTTGTGACAGTCAATAAACATATCTCCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153125 lncRNA upstream 13602 9829754 ~ 9830678 (+) True G122119
TU153071 lncRNA upstream 85219 9693716 ~ 9759061 (+) True G122086
TU153035 lncRNA upstream 215447 9628598 ~ 9628833 (+) True G122063
TU153022 lncRNA upstream 218059 9625244 ~ 9626221 (+) True G122058
TU152945 lncRNA upstream 281689 9542615 ~ 9562591 (+) True G121999
TU153135 lncRNA downstream 11650 9862956 ~ 9898880 (+) True G122126
TU153225 lncRNA downstream 228441 10079747 ~ 10132200 (+) True G122198
TU153270 lncRNA downstream 472223 10323529 ~ 10326651 (+) True G122236
TU153350 lncRNA downstream 901372 10752678 ~ 10753881 (+) False AMCG00002296
TU153390 lncRNA downstream 1019467 10870773 ~ 10927943 (+) True G122328
AMCG00002266 mRNA upstream 188522 9654733 ~ 9655758 (+) True AMCG00002266
AMCG00002264 mRNA upstream 219586 9619457 ~ 9624694 (+) True AMCG00002264
AMCG00002262 mRNA upstream 559847 9253274 ~ 9284433 (+) True AMCG00002262
AMCG00002258 mRNA upstream 658717 9173970 ~ 9185563 (+) True AMCG00002258
AMCG00002261 mRNA upstream 691370 9151395 ~ 9152910 (+) True AMCG00002261
AMCG00002274 mRNA downstream 2244 9853550 ~ 9863089 (+) True AMCG00002274
AMCG00002273 mRNA downstream 22041 9873347 ~ 9874094 (+) True AMCG00002273
AMCG00002278 mRNA downstream 99700 9951006 ~ 9971665 (+) True AMCG00002278
AMCG00002287 mRNA downstream 450001 10301307 ~ 10304361 (+) True AMCG00002287
AMCG00002290 mRNA downstream 514843 10366149 ~ 10376762 (+) True AMCG00002290
TU152752 other upstream 1082201 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 2447719 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3241672 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 3241672 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 4620782 5218830 ~ 5223498 (+) True AMCG00002152
TU153306 other downstream 716606 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 1525634 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1777706 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 1837294 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1984133 11835439 ~ 11836169 (+) True G122582

Expression Profile