RNA id: TU152257


Basic Information

Item Value
RNA id TU152257
length 873
RNA type TUCP
GC content 0.47
exon number 2
gene id AMCG00002190
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6586654 ~ 6602608 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCAATCTATACAGGAGCGGGGGTCGTGTTTGACAAAGAGGCAGTTTGTGTAATGTGTGTCCAAACCCGACAGCTTGAGTGTATCTTGTTTTCCGAGATAAGATTTCTCTACGGGGTGGGTTCGAGAACAAGCAGAGGCCCTCGGTGTATAAACACGCACAATGCATCGTGGGTAAACACACGGACCCCCTGATAAATTGTAAAGCAAAGCTGAAGTGTTTCATTCTCTCTGTTCCCTAGGCTGTGTGGTCTCCGTCTCGGGACGCATGACCTTCACCAGCAACAAGTCCATGGAGATCGAGGTGTTTGTGGACGCCGACCCCCTAGTGGAGGCGGCCAGGGGGAAGTACCGGGCCGTCACCGCCTTCTTCACCTACATCTCCCTGGATAAGGAGGGAAAGCCACTGTCTGTCCCGCCACTCAAGCTTGAAAACGAGGAGGAGAAGAAACGTTTCGAAGAAGGCAAAGTCCGCTACCTGCAGAACAAGGCCAAGAGACAGGCAGAGAAGGAACGTCAGCAATGACCTTTGACCGGAACCCCACGATGTCACGTGACAAATAACCCCGAGTAGACACAGTATAACCGTTCAAAACCTTAGAAGAAAACCCATGATTCGTGATTAGCAAACAAACTTAGTGCAGGGAGTGCCCTTTCGACTCTACTTGAATTGCATTGTCCTTATTTATGTTTCAGTGCTGCATaccaaagcatttaaatgtgtatttaagaGGGAAAACTAAATGCTTATTCTTGTTCGatcttaaaaagtatttttatttttaaaggcttgAATCACTATGTGCAAAGAATTATGAAGTCTGTATTATGCACcatgaaataaacatatattgcCAGTTACCAGGCACCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152177 lncRNA upstream 259173 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 308754 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 1016407 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1310731 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 1358555 5227674 ~ 5228099 (+) True G121187
TU152324 lncRNA downstream 190368 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 958458 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1044110 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 1227199 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 1307950 7910558 ~ 7917243 (+) True G121741
AMCG00002189 mRNA upstream 33180 6537081 ~ 6553474 (+) True AMCG00002189
AMCG00002188 mRNA upstream 64430 6520509 ~ 6522224 (+) True AMCG00002188
AMCG00002186 mRNA upstream 162391 6402910 ~ 6424263 (+) True AMCG00002186
AMCG00002182 mRNA upstream 200872 6383055 ~ 6385782 (+) True AMCG00002182
AMCG00002179 mRNA upstream 226010 6356405 ~ 6360644 (+) True AMCG00002179
AMCG00002192 mRNA downstream 33326 6635934 ~ 6655887 (+) True AMCG00002192
AMCG00002194 mRNA downstream 111499 6714107 ~ 6725801 (+) True AMCG00002194
AMCG00002195 mRNA downstream 171315 6773923 ~ 6785974 (+) True AMCG00002195
AMCG00002202 mRNA downstream 508169 7110777 ~ 7119186 (+) True AMCG00002202
AMCG00002203 mRNA downstream 517971 7120579 ~ 7128460 (+) True AMCG00002203
TU151873 other upstream 1363156 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 3047100 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 3050226 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3627179 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4645838 1924022 ~ 1940816 (+) True G120518
TU152502 other downstream 791192 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2151118 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3241672 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 3241672 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 3965304 10567912 ~ 10594304 (+) False AMCG00002294

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU918586 True 680 lncRNA 0.42 2 NC_048573.1 43559420 ~ 43579810 (-)