RNA id: AMCG00002186


Basic Information

Item Value
RNA id AMCG00002186
length 9711
RNA type mRNA
GC content 0.52
exon number 39
gene id AMCG00002186
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6402910 ~ 6424263 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCTGTCAGATCGGAGGGGgcagcgaggaggaggaggcctcAGAGCGCGAGGAAGTCCAGGGGGAGAAGTCCGACAGCGAGGGCAGCGACTACTCGCcggtgaagaagaagaagaagaaacccaaggagaagaaagagaagaaaatcaaGCGCAGGAAGAAAGACGAGGAGGATGATGAGGAGGAAGATGTGGGCctgaagGACTGTCTTGGATTTCTCTCCTCCTTTTGGCCTCTCATCGCCAAGAAGAACCCCAAGATCCCCATGTCCAAGATGATGACCGTCCTGGGCGCCAAGTGGCGAGAGTTCAGTGCCAACAATCCCTTCAAGGGCACCtcggccgccgccgccgccgccgccgtgGCCGCAGCTGTGGAGACCGTAACGGTGGCCCCGCCTGTCTCCGTCAGCAGCGTGACGCAGCCCTCCCAACCTGGGCCAATCAGAAAAGCCAAAACCAAAGAAGGCAAAGGGCCGGGGGTGAGGAGGAAAACCAAGAGCATGAAGGAGGCCAAGAAAAAAGGGAAGGGCAAGAAGATGAAGCTGAAGATGGGGGTGCAGAGCGGCAAGAGGAAAAAGagcgaGGAGGATGAACACGAGGAGTCAGACTTTGACGACGCCAGTATCCACAGCGCCTCGGTGCGCTCTGACACCTCGGGGGCCCCCAAGAAGAAGGGCCGCAGGGGCcgtaagaagaaaaaaaAAGGAGACGGGTACGAGACGGATCACCAGGACTACTGCGAGGTGTGCCAGCAGGGCGGCGAGATCATCCTGTGCGACACTTGCCCCCGGGCCTACCACCTGGTGTGCCTGGAACCCGAGCTGGAGAAGGCCCCCGAGGGCAAGTGGAGCTGCCCCCACTGTgagaaAGAGGGCATCCAATGGGAGCCcaaggaggacgaggaggaggaagagccggtgggtgaggaggaggacgacCACATGGAGTTCTGCCGGGTGTGTAAAGACGGGGGGGAGCTGCTGTGCTGCGACACCTGCCCCTCCTCCTACCACATCCACTGCCTCAACCCGCCCCTGCCCGAGATCCCCAATGGGGAGTGGCTCTGCCCGCGCTGCACGTGTCCGCCTCTCAAAGGGAAGGTGCAGCGAATTCTCCACTGGACCTGGGGGGATCCCCCGCTGCCTCCAGAGCCCCCCGCCGGCCCCGATGGGGAGCCTGGAGCCCTGCTGGTTAAACCCCCCCTGAAGGGGCACCCAGAGAGGGAGCTGTTTGTGAAGTGGGCGGGACTCTCCTACTGGCACTGCTCCTGGGTCACCGAGCTGCAGCTGGAGCTGTACCACACGGTGATGTACCGCAACTACCAGCGCAAGAACGACATGGACGAGCCGCCGCCGTATGACTACGGCTCCGGGGACGAGGACATGAAGAGCGAGAAGAGGAAGAGCAAAGACCCGGAGTACGCCGCCATGGAGGAGCGCTTCTACCGCTATGGCATCAAGCCCGAGTGGATGATCATTCACAGGATCCTCAACCACAGTTTTGATAAGAAGGGTGATGTGCACTACCTGATAAAGTGGAGGGACTTGCCTTATGACCAGTGCACCTGGGAGGTGGATGACTTTGACGTCCCTGAGTACAACAGCTTCAAACGGGCCTACTGGGACCACAGGGAGCAGATGCTGGGCGAGGACATCCGGCCCCTGGGAAtgaggaaagggagcaaagccCGAGAGGAGGAGAAGCTTGAGAGGCCGCCGGACACTCCTATCGTTGACCCCACCATCAAGTTTGACAAGCAGCCCAGATACATTGATGCCACCGGGGGCACCCTGCACCCCTACCAGTTGGAGGGGTTGAACTGGCTGCGCTTCTCCTGGGCCCAGGGCACTGACACCATCCTGGCCGACGAGATGGGCCTGGGCAAGACTGTGCAGACCATTGTGTTCCTCTACTCGCTCTACAGGGAGGGACACTCGAAGGGGCCATTCCTGGTAAGCGCCCCGCTGTCCACCATCATTAACTGGGAGCGGGAGTTTGAGATGTGGGCCCCTGGCTTCTACGTGGTGACGTATACTGGGGACAAGGACAGCCGTGCCGTGATCCGTGAGAACGAGTTCACCTTCGAAGACAGCGCCATCAAGACCGGCCGCAAGGTCTTCCGCATGAAGAAGGACACTCCCATCAAGTTCCACGTGCTTTTGACGTCCTATGAGCTGATCACTATCGACCAAGCCATCCTGGGCTCCATCGACTGGGCATGCCTGGTGGTGGACGAAGCCCATCGCCTCAAGAACAACCAATCAAAGTTTTTCAGAGTCCTCAATGGCTATAAGATCTACTACAAGCTCCTGCTGACGGGAACTCCTCTACAGAACAACCTGGAGGAGCTCTTTCACCTGCTCAACTTCCTCACCCCAGAGCGCTTCAATAACCTGGAGGGATTCCTGGAGGAGTTTGCAGACATCTCCAAGGAGGACCAGATCAAGAAGCTTCACGACCTGCTGGGCCCCCACATGCTGCGCCGCCTGAAGGCCGACGTCTTCAAGAACATGCCGGCCAAGACGGAGCTGATCGTCCGAGTGGAGCTCAGCCCCATGCAGAAGAAGTACTACAAGTTCATCCTGACGCGGAACTTCGAGGCGCTGAACTCCAAGGGCGGCGGGAACCAGGTGTCACTGCTCAACATCATGATGGACCTGAAGAAGTGCTGTAACCACCCCTACCTGTTTCCCGTGGCTGCTGTGGAGGCCCCTGTGCTGCCCAATGGCTCATACGATGGCAACCTGCTGGTGAAGTCTTCGGGCAAGCTGACCTTGCTGCAGAAGATGCTGAAGAAACTGAAGGATGAAGGACACAGAGTGCTCATCTTCTCCCAGATGACCAAGATGCTGGACCTGCTGGAGGACTTCCTGGAGTACGAGGGCTACAAGTACGAGCGGATTGACGGGGGGATCACGGGAGGGCTGCGACAGGAGGCCATTGACCGCTTCAATGCTCCGGGGGCGCAGCAGTTCTGCTTCCTCCTGTCGACGCGCGCCGGGGGACTGGGCATCAACCTGGCCACGGCAGATACCGTCATCATCTACGACTCTGACTGGAACCCGCACAACGATATACAGgCGTTCAGTAGGGCCCATCGTATCGGTCAGAATAAGAAGGTGATGATCTACCGCTTCGTGACACGGGCCTCGGTGGAGGAGCGCATCACCCAGGTGGCCAAGCGCAAGATGATGCTGACCCACCTGGTGGTGCGGCCCGGCTTGGGCTCCAAGACCGGCTCCATGtccaagcaggagctggacgaCATCCTGAAGTTCGGCACCGAAGAGCTCTTTAAGGATGACGTGGAGGGAGCCAGAGCCAacgGTGACAATAAGGATGGGGAGGAGGGCAGCGTAATCCACTATGACGACAACGCCATCTCCAAGCTGCTGGACCGCAGCCAGGACGCCACTGATGACACGGAGCTGCAGAACATGAACGAGTACCTGAGCTCCTTCAAGGTGGCACAGTACGTGGTCAGGGAGGAGGACGGAGAGGAGGAGGTGCAGCGCGAAATCATCAAGCAGGAGGAGAACGTGGACCCCGACTACTGGGAGAAGCTGCTGCGGCACCACTacgagcagcagcaggaggaccTTGCCCGGAACCTGGGCAAGGGCAAGAGGATCCGCAAGCAGGTCAACTACAATGACACTTCCCAGGAGGACCAAGAGTGGCAAGATGATCTTTCAGACAATCAGTCCGAGTACTCCGTGGGATCCGAAGACGAGGATGAAGATTTCGAGGAGAGGCCGGAAGGGGGGCGCCGACAGTCTCGCCGACAGCTGAAGAGCGATCGCGACAAACCCCTGCCCCCCCTGCTGGCACGGGTCGGGGGCAACATCGAGGTACTGGGGTTCAACGCCCGTCAGCGGAAGGCCTTCCTCAACGCCATCATGCGCTGGGGAATGCCCCCCCAAGACGCCTTCAACTCCCACTGGCTGGTGCGGGACCTGCGAGGCAAGAGCGAGAAGGAGTTCAGggcgtATGTCTCCCTGTTCATGCGTCACCTGTGTGAGCCAGGGGCCGACGGCGCAGAGACGTTTGCAGACGGGGTGCCTCGGGAGGGCCTGTCTCGCCAGCATGTCCTCACCAGGATTGGGGTCATGTCCCTCGTCCGCAAGAAGGTACAGGAGTTTGAACACATCAACGGGAAGTACAGCACCCCGGACCTGCTGCCTGAGGGGGCGGAGGTGAAGAAGCTGAGCGAGAGCCTGTCCTCTGACCCCAACACCCCCGTACCCGCCAGCCCTGCCGCCACCCAGCCCGGCACCCCCATTCCCACAGAAAAGACCGAGTCAATCTCAGGGCCGTCGGAGGACAAGGAACCAGCAGAGCCAGACAGCAAGAGGACAGCCGAACCTGAGGTGCCCACCAGCACCGAGTCCTCGCCCGGCGCGGAGAAGCCCCCCGAGAGCGAGGAGCCCAAAGGAGGAGGGGCCGAGGAGCGACCGGCAGAGGATTCTGAGAAGACAGAGCCAGCGCCAGAGCCAACGGCAGCCAAAGGAGAACTGGgtcgagagacagagagatccCCAGAGAAGGGGGAGAGTAACCCTGCCTCTGTCAAAGGAGAGGAGAAGGAGTCCAAACCAGCAGCCGCCGACGAGGTGAAGAGGGAGGAGACGCCCGACAGCCAGCTGAACGGAGATAAAGAGGGGcgggaggaggcggaggagatCAGGAAGGATGACAAGATGAGCGGGAAGATGAAGTTCATGTTCAACATTGCCGACGGAGGCTTCACAGAGCTGCACACGCTGTGGCAGAACGAGGAGCGTGCAGCCGTGTCCTCAGGGAAGATGTATGACATCTGGCACCGCCGACATGACTACTGGCTGCTGGCTGGCATCGTCACGCACGGTTACGCACGCTGGCAGGACATCCAGAACGACCCACGCTACACCATCCTGAACGAGCCCTTCAAGAGTGAGGTCCACAAGGGCAACTACCTGGAGATGAAGAACAAATTCCTGGCCCGCAGGTTCAAGttgcTGGAGCAGGCTCTGGTGATCGAGGAGCAGCTGCGACGGGCTGCTTACCTCAACATGACCCAGGACCCCAGCCACCCCGCCATGGCTCTGAACGCCCGCTTCGCCGAGGTCGAGTGCCTGGCCGAGAGCCACCAGCACCTGTCCAAAGAGTCGCTGGCGGGGAACAAGCCGGCCAACGCCGTGCTGCACAAAGTGCTCAACcagctggaggagctgctgagCGACATGAAGGCGGACGTCACTCGGCTGCCCTCCATGCTCTCGCGGATCCCCCCCGTGGCGGCTCGCCTGCAGATGTCCGAGCGCAGCATCCTGAGCCGGCTCACCAACCGCGGCAACGAACCGCCCCCCCAGCAGCCCTTTCCACAAGGATCCTTCGCGTGCTCCCAGATGTACGGCAGCAGCTTTGGGACAAGCTTTCGCGGTCCCGGAGGTGGGGGCATCGTGAATTACAGCCAGATGCCCCTGGGTCCCTACGTGAGCGCATCCAGCAATGGCCCCCCGCCTCCCTCCAGCCACCTGGACAAGAAACCCAGCGACCCCCTGAAGGAGCTCACCGCCGCAGAGCACAAGACGGGCAAGCCCAGCGATGTCATCTGTATCGAGGACTAGCCCCCCGCTGCCCCCTTCCCGCAGTGTGGGAAACGACAGAGACGAAGCATCCTTTTGGAAAGAGCTCCCATTAAACTGAGAAACACATCTTATCGATTGCACTTGTTCCCCTCCCTAGGACACAGCCTAACTGGGGGGTCCCTCCCATGCAGTACATACCCTGCTGGCCACCTGTGTCTTCGCTTCTGTCTTACGTTCATGAGGAAGGTCACGGGTTCGGGGCAAGCCAGACAGTTGGACGTCAAAGCAGGAGGTTCTGAAGTGAGACCTGGCCGTGCCCTCAGCTTCTTATCTGTCTCTCCCACGCTTCACGCTGACTCAACAGGACTGGGGAACCTTGTCTCGGACATTTCAGTATGGCCGTGCCGGAGTGTCCTTCCTTTTGTCTGGGAAGTTTCTTCTCTTTTATGCCTTGGCTGCAGTCTTAATGATGTTTATCCTTTAGCTAGACGACAACCTACCATTTAAAACCTGTAAGATTCGAAGTTGGGGAGGATTatgtccccccccccaacacaacACCCGCAATCCCCATCTCTTTCTCTGGCAGTGGATTACGCACTATACAATCGAACCTTGTGTGCGTCAAACCTGGAATCTTCACACTCCCTTGGGGTCTCCAAAGGGCACCTGCACTCGCCTACCCCCGACCGTAGACTCCTCCTGCTTAGACCCCCTGCGGCTTCTTCAGATATCCAGCCGATGTACAGAATGCAATTGCTTAGCCATACAAACAGCATACGAGGTCAGGCATCGTTCCTGATACAGAAGAGCAGCAACGGGATCAgctcataatatatttttaaagtattttattctgtaactATAGCTTAAAGGAGTATGGGCATTTTCTGGGATGTTGAAGGGGTTTCCTAGCCACTCCTAGAGAAACACATCTTTGCGTAGACATCTCTCAAGACTCTTGTACAGGACAGCTGCTGTAGTGCACCCTGGCTTTTGGCATAGCTTTCTTGGAAAGATGAGGAAGTCAGATCTCAGTGTACACACACAGCTCCGACATTTAAAAGCTACCaagatttaaaaacactatTGTACAGAGACTTcataatctttatttaatattgtatggggaaatcagaaagaaaggaagaattttaacatatatacatacatatatatatatatctaggAGACTAGACAGaaagggacaaaaaaaaaagtgcactcaaaagtgtttttgaccatttgttttttttatacctgGGCTCAGTAAATGAAAAGCCTGTTTGGGACAATTCTTGGTTGTACGGCAAAACTGTGGTCTTTTAAAGTATTCTCTAACGCTGCCCGTGCGATGGTGTTGTGCCGAAGTCCTGGATCGCGGGGTGCCCGTAACCTGGCACTGATTTCTCACTCTCGTTTCGGAGCCGCAAGCCAGTGTGGAGCCCTTTGAAAGTCTCCCTTCTGGTTTGACTGTCTCTAGGCACATTCATACGTAACCAAAAGTTTCGAAGGACGACGGAAGAAAAGTTCAAACGCGATCCAATCATAAAACCACCCCGAGCTTTGGATTGCGCCGGTCTTAATGATAACCTTAACTCCGTGCACTCTACATCTTTTCTAAGTTGAGATACAAGAAATGCAAAGTCATTTTAACTCCGTGGAGAAGATACCTCCTCAGTCAACACCTCTGAATGTTCTCTAttcctgttgttgctgttgttgttttttaacttttatgttttcctttgctGCCATTTTGGAGAAGCACTCTTTATTCTTAAGGAACTGAAAAGGAAATCAGATGACTCTCAAAGGAACTGTATGTACACAGAGGCGTACATTGTAATGTCATTTAACACGAGTTGTTGGAATTGTTGAAGTTGTGTTACATTaggcgtgtgtgtttgtgaggggAAGGGAGATAGTGTTGCAGAGCACCTTACTGTTTGAAGCATCGAGGAAACTGTAGGCGTTGGTACAGATGATCTTTTTcttgaactgtttttgttacCCTAAAAGGCAAGGGGTCTGCTTTTTCACCGTGTCTTTATATTTGGGCTGGACGAAAGGTAGACACGGCACAGGCAGTGGCTGCTTTATGTGATTCAGGAAGCCTTGAGTCTAACGAAGAGCAAATATAGCTGTTGAAGAAAGCGTTccctgttattattgtttatttcttggcagactgctgctgcagctggtcTCAAGCCCAAGGACTGGATTCAATATGAAACTACCTGTTTGTGTCTTTGAGAGACACCAAATGCTGGCTGTTTTTATGTACATATGTGTTTAAACATATCATAGAAAGGGCCACATGTTCGGCCCAATTTACCTGGCTATTGCAAATAAGTATAAATGCCCTGTTTTAGAAATATTGGTTACTCACAGTGTTCATTTCTCTTTCGTGCAGGAGAATTCACTTTCAGGCAAGAAAACAAGACTTGCTGGAATTAAAAGAGAATTGGGCCTCACTTAGGCACCTATAGATCACATACTTCAAACAATCCCGTGGCTGTGTGAGGAAGTAAAGTAGTCCACTACGTTGTATTCAAAATCCATTTGGTACATCGCCTTTTATGCACCACAGTGTGTATTCCTGTGTAGAGGGTGTGTTTACGCTGATGAAGCACTTTAATAACTGAAAGGCAAAGCTCTCCTGTGTTGAGTGAAGGCTATAAACGCTACACATTCTGTTTACAAAGGTAAATGTCGACCCATTCAGACAAACACATGACAACTGGCACAAACCATCACCTAcgtacccctctctctctgctgtggaGTACTCAGTTCTTCTAAAGCAGCTACTCCTTGTTCTGTGTCTTCATGTTGTTTTAAGAAGTGTTTTCTGATGATGTTGTGTAACTGTGAGGTTATTGGCcctatgtttgtattttttttaaatttaatttatatactttgaaacaatatttgttAGTGTAAATATGAGTGGCTTTGTTTGTgcatactgttttatttattggactaattttctttgcttttcatgACAAACTCTCAGATATGTAGCATCTTCAGACAGTACAGTCCAGAACTACACAGTCGGTCCCAGCAAGGCTTTGCAGACAGGTTGCGCGTTCTTAAAATAGGCAACAgcagagagaaaaactaaacaaaacacttgtTAACATAGTATTTGCAGAACAGTCATTTGTTATACAGTAGTAGGAAAACTGCAAAACCTGTAGAATCATACAAATACAGGATATATTCCCTGATGACTGTTTTGCATGTTCAGAACTGCATTCTGTGTGTGGGAGCAACTGAGACGACTACTTTAATCCTTCTAGACTTCTGACAATGCAGAGTAGTTTCTTTAAAGCGACTACTGTACCGTGTCTTAACTGGGTTGGAGTCACTAGATCTGTTCCTTTTTCTTTGAGTCAGTGTTCGTTTTCTTTAGAAGTGCCAGAAAGAAGgaactataaataaaaataaactgcaaatgtacaaaacaaaagaaaagaaagaaatgcaatcaAACTGAAGCTCACCAGAATGTAACAAGTATTGCACTGTCTGAATACAGCagtgcaaacaaatatatatataatgaaaaaggcTTCAGtctaatattataaatatatatatatgaataacaaaagCTTCAAAAGCTCTCAGAAGAAACCCTGGTAAAGATGTCtcttttttagaaatgtatgcaCAGCatgtggaaatgttttgtatgaaggttcataatgaaaaataaatatacagtatgtatgtatacatatacacacacatatatatatatgtatacatatatatatatatatatatatataagaaataacaacaaatatgaCAAACTTGACCAGTGTTAGGATATGTGCAtttgtaaaggaaaacaaatgaaaggaaaaaatgaaaaatggtcATCTCTTACTTTGTACcgtgtgtatttgtttaatgtgttttaataaattctCTCAGTAAGAAAGCGAAAGTGGCTGATGAGTTTCTCGTGCGCCTGGTTGACCCACGGTGGAGCACAGAGTCAGTGATGGAGTCCATGTAGGTTTAGTCCCGCTGGACAACTGCATTGGATTGAAGTTTGTACTTTGAAGCCGCTAGATTGTACGTTCTAAATAAGTCTCTGCAATATGTCAA

Function

GO: NA

KEGG:

id description
K14435 CHD5; chromodomain-helicase-DNA-binding protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152177 lncRNA upstream 75429 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 125010 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 832663 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1126987 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 1174811 5227674 ~ 5228099 (+) True G121187
TU152324 lncRNA downstream 368713 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1136803 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1222455 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 1405544 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 1486295 7910558 ~ 7917243 (+) True G121741
AMCG00002182 mRNA upstream 17128 6383055 ~ 6385782 (+) True AMCG00002182
AMCG00002179 mRNA upstream 42266 6356405 ~ 6360644 (+) True AMCG00002179
AMCG00002181 mRNA upstream 57710 6326884 ~ 6345200 (+) True AMCG00002181
AMCG00002180 mRNA upstream 78351 6316286 ~ 6324559 (+) True AMCG00002180
AMCG00002183 mRNA upstream 106663 6287217 ~ 6296247 (+) True AMCG00002183
AMCG00002188 mRNA downstream 96246 6520509 ~ 6522224 (+) True AMCG00002188
AMCG00002189 mRNA downstream 112818 6537081 ~ 6553474 (+) True AMCG00002189
AMCG00002190 mRNA downstream 162658 6586921 ~ 6588615 (+) False AMCG00002190
AMCG00002192 mRNA downstream 211671 6635934 ~ 6655887 (+) True AMCG00002192
AMCG00002194 mRNA downstream 289844 6714107 ~ 6725801 (+) True AMCG00002194
TU151873 other upstream 1179412 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2863356 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 2866482 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3443435 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4462094 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 162391 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 162391 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 969537 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2329463 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3420017 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008019 False 9290 mRNA 0.45 41 NC_007122.7 29574922 ~ 29650930 (-)
grasscarp (Ctenopharyngodon idella) CI01000306_05414347_05434965.mRNA True 5638 mRNA 0.51 37 CI01000306 5414271 ~ 5434965 (-)