RNA id: TU152324


Basic Information

Item Value
RNA id TU152324
length 4987
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G121526
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6792976 ~ 6798043 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACAGGTTTTATTGCATATCAATTTCATGTATAAATTCTTCATAGCATTGGAAAGATTACATTTGGTATACATTCCTATTCTACAGAATTAACATCAGAATTTGAGaatattttaatggaatttCTCTAAAGAAGTACATCTTTAATAATCACAAGCATCAAAATGAACTGCAATTTCAGAAATAGGTgtttactttaatattattCTACAATCTTCcaaattttcattatttctctcgcacaagcatattttatttacttaataacCTTCTGCCCGTTTTCGTTTTGTTTCCGAAGGCAGTAAAAGACTTGAAGTCTCCAATGTACAACCTAACCACATGTACAATAAGTGCAtctacagatttttttctttctttctcgatttttttcattttttattttttttacattttttaaaatagttttatgaaAAATTTCACAAACGGACACCATTATGACCGCTAAACACAAGTCAtgcacagtattttttttttcttcttataaaCATAACAGAGGCGATATACAATTCAGGTCCAAATGAAACAAGCACCATCCATTTTAAACTTTCCCATATAATTTTTGACTTCCAGACATATacaacaatcttttttttcagtctttcttcctattaaagttttttttttttaataatatacagtttGAAAGAACCATATTACTTATGTTTGAACTGtaacagtggggggaaaaaaagaccaGCAACCACACCAATTTAGTTATGCAGTGACCCTTACTCAATTCCTTAAGAAAGCTGGTAATGTGatcttttacatttcataatttaTCTACAGACCTACAGCGCACACTTAAACAGTAGTATGTGACATGGATTTACCTCAGttatcttttattcaaaattaaaataaacttgttgAACCATAGTTTGCCTTTGCATATATTAAAGACTCTATTGTAACTTCTCTATATTTCCtttgtcattcattcattccccACTTGAAACTTTGTGAagagaaatgcaagaaaatagaaaatccaTCTATCGGGTGTCAATCTTCAGTACTGCAGTGCTTCAGAAAGAGAGGGATGGGCTCTGTCTCACAGTTATAGCCTTTTTCAAACGTGAAGCAATCACCCAGTTCAAGCTGCACTGTGAATCTGTCACTCCTTGCTTAGTCAAATCATGATTTTGACGATAATTCTGCTATGCAACTTCAGCAAAGATATTTCCAGCATGGACggaaacattacatatattaGGAAACGTGGGGTTTAATGTTCAAACACATTAACAGCATTATTTAGGCAAGAGTCATCCAAACAACAACTCTGATAGGTTTTTGCTTAGCTGGGTATGTCAGGTCAATAATCTGACTCTGTGACACCCCAGGCCTTTCTATGCAGAGTCCTCAGGCATTTTCTCCCAAGAGTTAAAGTGCTTATTTGAACCAATTAAGCCTCATCCTGAAATTCCGAGCAACACTGAGAGATACGGAGAAATTAAGACTCAGATACATACCTACTTTCATTTAACTGCCACCCCCCAAATAACAGTAGGGTAACTCTGCACTACTGAGGAACGAATCACAATGCAGTGAAGGTTACAACTGTATTCTTAATCCAGCAACTTGTGACACGGACTCCCCTTTAAACTCTCCCCCCCCAGTCGGCGGGACCACTGGGGCGCGGCCGCTAAGTGCAATTACAAACGTCGAGCCACGCAAACCGATATCCGATGAGAGCCCTGAATCATCCCGACGGCCCATCTAGCAAATCGATTGAAAGGAGATCGTGTTTCTCTGGGGTCACCCGTGACATGACGTAAAATAAAACCGTTACCGAAGGGGAGCTAAACAGGAATAGCACTGAGTATCTACCTGCCAACCTGGTGTACGTTCAGGGCACCAATCTGCGGTGGTGTGGGGGTGTGGTGCGCCGAGCAAAATGCAGCAAAGGGACAAACAATAGCATGACAATCAGCAACACTGGAGTGAAGGTTCTTCATTTAACTGTCAACAGTTAatctttttctttacatatatcataataataataaaaaacagcaataaaacattcttttacatattttacagaatgaACACGTTGGTTTACTGCAGTACATTTCACTGTCTGGTTTCACAGTTCAGAGGGGTGCTCTGGTGGGGGTAACGAAGGAGCGACGGGTCTCCCAGCAGCACAGACGCAGTTGGACCTCTAACGGCCCTGCGGTCGGAACGAAGGCCTCCACACTATGACACCAGGGACTCTGGGATTCACCTGTGCAAGCACACACTTCTCTATCTGTACTATCATTGCCTTTTCTGGGTTTTGAGAATTTGAGAGCTAGAACTGAACttatttacagacacacacacatccaggtGGTTCCTTCGACAAGCAGGACAGCACTTGGTCAGCATATGAAAACCACGCCGGGTCCAACAGCACAAAGATTAAACTGAACGGGGAAACATGCACAGGCATACTTGTCAAAGCGGATACATACGCCTTCTCTATCTTTTTAATGCCGTCTTTGTAAAGCTTCTCTTACCATATCTCATCCGTCCCAACCGAGCTCTTGTTCATTTAGTTAATTCGTATGAAATTACCAAAAGCAAAATGCTATCCTCCCAtccacattaataaaaacaccacTGGCATGATTAGTTTGCCGTGTGACACTTAAACGAGATGGAACTGCGATTATTTGGGGATTTTTATGTAAGGGGAGAAAAGAGTAAGATTAAAGACCAGTTTACTAATTAACCTGGTGCAGGACTGATAAGAGAAAGAGTTAAAAACAAGGTGACCTATGACCAACGGTTCCTTTGTATTTGCCCCCTGATGTGGCTCTAACAATAAGACGTCACCCATTTCGCACACAAACCCCCACCACACAAGAGACTGTGAGACGTGGGATTTGACTGCAGCGTTCAGCTGACGCACTGAATCTCAGAGCTGCAACAAGAGTCTGATCTTTCGGATTGAGAGTGGGGTTTACCGTCTGTCTCGTATGGCACACTGGTTCCACACACATGCCTGGATGCAGGGAAAATTCAAAATCTCaccttttcatctttttttttccttcaacgGAGTCAAGTGGACCAATCAgggagaggttttttttttgtccttttAAAGTtgtcaaatcaaacaaaatctacaggaaaaaacaacaacagcgacGAGAACCCTTCAAAAAGAAATGATTGtctggaaacaaaacattttctacgGGTTATTTGGCACACACAACTCTTGCTACGTACTTCCTGGTTATTTTAGACAACATCATACAacaatattacacaattttGGTCCTTcactaaataattatattaacattatttttgtttagcaCCGCCATGGTgcctaaagaaaaaaaaaaaagaaacaatactgTTATTATAGAACAAATAACATACAGAGTAAGGAAACACAAATGTTGAgtttatacaaattaatttaaattgaatatggAAGAAAGAGTTCTCAGAATTGGCCCCTATAGGGAAATAATTTAAAGTCCAAATAcctgcttacattttaaaacaaatatctttCGATTCATGTGGACTGTCCTCTTTGAGGAATGCATCGTCTGCTCGGGagtgtttgttaaattattctCACTACAGTTTTAGCTGCTTCTTGATAGTATAGTACTTCCATTGTGCAAAACCTCCATATGATTGTAATAATGGTGTGGATATTACGGTCACTGTTGAAAGGTATGTTCACCGAGGAATGTAACCATTAAAATCCATTATGCGACAGTGCAGAGGCAGCCGTGCTAAGACAGTGTGGAGCGAGCGGTCAGCGATCCCTCTGCCGGAGCCTGACAACACGCATCATGAGAACATGAGTCACATTGACGGGCAATCACTGAAGTGTTGCTCTTGTTTGTGCCTCCTGGATTCCTTCACTTTAGACATGTGATGCCACTGCTTGAGTTCACTGTAgcagtagtattaataataataatattaataggtAGCTAGGGAAATAAGTTTCATATGATTGTGATCTAAATTATGCGTTTAAAAATTAACCAAGCCCGCCTGACGAGTGGTATTTTACagatactgtatactgtacacTTCCTTTCCTGGCTGCTGGAGTTCTCACTAAAAGAGCTGGTGCTTTCCCTGGGTTAATGCCCCcaccatttaaaacattactttCTTTCACAGCCACTCAGATCCGGTGGGGGAGAAACTTAATTACTGTAGGTCTAAGCAAAAAAGTGTGACGATGGCTCTTAGCAGGCAGGGCAGTGGATTTAGCTAGTAATGCCTTCTGCAAACAAGAACAAttgctgtaattattattattattattattattattattattatcttaattCCAGCTTTAGAGGCTCAGACAGGAGTGACATAAACTGGATCAACCCAACCACCGAACTCGCTCTTGGTCCCCGTGACTGACAAGTCTGAATTAAGAGTGATGAACGTGTTTGtgtagttttgtttgtgttttctcccCCAATGGAGTGTGTTTTCTACAAGACACCAAACCTTCTACGTGCTGTTGGACAGTGACAGTAAGTGGCGCGCGACTGGGGGTGGGCTGGGCCGACTGCCGGACCTCCAGGCCTCTGACAGGGTGAAGCAGAGCCTCCGTGTTCCTCTCCCCGGCCAGCCGTCTGTCCACGCTGACCCTCGGGGTCGGAGTCGCTGGTCCCGGGGTCTCGcatcctctctctcctgctgtcGGGTGGAGTTGGTCCCACTGTTTACTTCGTGGCCAGGCTtcctctctgtccttctctctctttcgcactcccctcccctccccctcccttcccttccccctactctctctccctcccccccgccGCTCCTCTCTCGCGCTCTCAGATGTGGTTGAGTGGGTGAAAGCTGCTCGACTCTGATGCGCCCCCTCCCATGTTCAGCCAAGCATCCAGAGAGTTCTGGGAGGATGTGTGCAAAGGATTGTTTTCAGACAGAGACAGCATCATTGCATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152177 lncRNA upstream 465495 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 515076 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 1222729 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1517053 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 1564877 5227674 ~ 5228099 (+) True G121187
TU152516 lncRNA downstream 763023 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 848675 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 1031764 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 1112515 7910558 ~ 7917243 (+) True G121741
TU152632 lncRNA downstream 1147322 7945365 ~ 7953624 (+) True G121767
AMCG00002195 mRNA upstream 7002 6773923 ~ 6785974 (+) True AMCG00002195
AMCG00002194 mRNA upstream 67175 6714107 ~ 6725801 (+) True AMCG00002194
AMCG00002192 mRNA upstream 137089 6635934 ~ 6655887 (+) True AMCG00002192
AMCG00002190 mRNA upstream 204361 6586921 ~ 6588615 (+) False AMCG00002190
AMCG00002189 mRNA upstream 239502 6537081 ~ 6553474 (+) True AMCG00002189
AMCG00002202 mRNA downstream 312734 7110777 ~ 7119186 (+) True AMCG00002202
AMCG00002203 mRNA downstream 322536 7120579 ~ 7128460 (+) True AMCG00002203
AMCG00002204 mRNA downstream 347682 7145725 ~ 7150413 (+) True AMCG00002204
AMCG00002207 mRNA downstream 354430 7152473 ~ 7153321 (+) True AMCG00002207
AMCG00002205 mRNA downstream 358444 7156487 ~ 7157849 (+) True AMCG00002205
TU152254 other upstream 190368 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 190368 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 1569478 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 3253422 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 3256548 3533814 ~ 3536428 (+) False AMCG00002098
TU152502 other downstream 595757 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 1955683 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3046237 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 3046237 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 3769869 10567912 ~ 10594304 (+) False AMCG00002294

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072529 True 1554 lncRNA 0.32 2 NC_007119.7 48546053 ~ 48548092 (-)
mexican tetra (Astyanax mexicanus) TU78108 True 678 lncRNA 0.28 1 NC_035902.1 40761495 ~ 40762172 (-)