RNA id: TU152177


Basic Information

Item Value
RNA id TU152177
length 285
lncRNA type intronic
GC content 0.45
exon number 1
gene id G121417
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6327197 ~ 6327481 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcgtttggtgtccattaatagctaagtgatcaaggatcctatccagtctgtttttgaatgttcccaaattgtctcttcagccacattgctgaggagtttgttcagattgtgacgcctctctgtctgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctgttttgatgtggttgatgtctttcatgattttgaagacttggatcaagtccccacgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152159 lncRNA upstream 49297 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 756950 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1051274 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 1099098 5227674 ~ 5228099 (+) True G121187
TU151864 lncRNA upstream 1122583 5202849 ~ 5204614 (+) True G121178
TU152324 lncRNA downstream 465495 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1233585 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1319237 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 1502326 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 1583077 7910558 ~ 7917243 (+) True G121741
AMCG00002180 mRNA upstream 2638 6316286 ~ 6324559 (+) True AMCG00002180
AMCG00002183 mRNA upstream 30950 6287217 ~ 6296247 (+) True AMCG00002183
AMCG00002184 mRNA upstream 41636 6284545 ~ 6285561 (+) True AMCG00002184
AMCG00002174 mRNA upstream 85118 6229136 ~ 6242079 (+) True AMCG00002174
AMCG00002176 mRNA upstream 100367 6216381 ~ 6226830 (+) True AMCG00002176
AMCG00002179 mRNA downstream 28924 6356405 ~ 6360644 (+) True AMCG00002179
AMCG00002182 mRNA downstream 55574 6383055 ~ 6385782 (+) True AMCG00002182
AMCG00002186 mRNA downstream 75429 6402910 ~ 6424263 (+) True AMCG00002186
AMCG00002188 mRNA downstream 193028 6520509 ~ 6522224 (+) True AMCG00002188
AMCG00002189 mRNA downstream 209600 6537081 ~ 6553474 (+) True AMCG00002189
TU151873 other upstream 1103699 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2787643 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 2790769 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3367722 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4386381 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 259173 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 259173 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 1066319 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2426245 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3516799 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile