RNA id: AMCG00002176


Basic Information

Item Value
RNA id AMCG00002176
length 2391
RNA type mRNA
GC content 0.55
exon number 15
gene id AMCG00002176
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6216381 ~ 6226830 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGACCCGCGGCAGTGGCGTGGGCCGCTCTGCCTGTACTGTCATTTCTGATCGTTTCCCACCAGGAGCAATAAAAGTGCACTTCCTTATCTGTGCAGATTCGCGGCACAAGCATCCCTGCGACGTTTACACTCGTctgcttgtttttattgtatttgttattgagCCTTTTCCCTGCGACATGCTGCGTGCGAGGGCGGCGGTCTGGCGGTCTTGGAGAGGGTTCAGGACGTTCCCCTTTGCTGCGGTGGAAGTGAAGAATGAGCCCATTCTAGAGTTCAAAGACGGGAGCCCAGAGAGACAGGCTCTGATACAGGCCCTAAATGAGCTGAAGGGGAAAACGGAGGAAATCCCCTGTGTGGTGGGAGACGAACAAATCTGGACCAAAGACATAAGATACCAACTCTCGCCCTTCCAACATGCGCACAAAGTGGCCAAGTTCTGTTATGCTGATAAGGAACTGCTGAATAAAGCCATCCAGGCCTCCGTCGCAGCTCGCAGGGAATGGGACCTGACGCCCGTGCAGGACCGAGCCCAGATCTTCTTCAAGGCCGCAGACATGATCAGTGGACCCCGGAGAGCGGAGATCTTGGCCAAGACAATGATCGGCCAGGGCAAGACCGTGGTGCAGGCCGAGATCGACGCCGCCCCAGAACTGATCGACTTCTTCCGGTTCAACGCCAAGCATGCTGTTGACCTGGAGAAGCAGCAGCCGCTGCCGGGAGAGGGCAGCACCAACACCATGCTGTACCGAGGGTTGGAGGGGTTCGTAGCTGCCATCTCGCCGTTTAACTTCACTGCGATTGGCGGAAACCTGGCAGGAACTCCAGCACTGATGGGGAATGTAGTCCTGTGGAAGCCCAGCGACACCGCCATGTCGGCCAGCTATGTTGTCTACAAGGTCTTGCGGGAGGCGGGACTTCCTCCCAACATCATCCAGTTTGTGCCGGCCGACGGTCCCATCTTCGGAGACGCCATCACAGCATCTGAGCACCTGGCTGGCATCAATTTCACCGGCAGCGTACCAACCTTCAAACGGCTGTGGAAGCAGGTGGCGCACAACCTGGATCGCTATCGCAACTTCCCGCGCGTGGCAGGAGagtgCGGCGGGAAGAACTTCCACTTCGTGCACAAGTCTGCGGACGTCCAGAGCGTGGTGATGGGGACGATCCGCTCAGCCTTCGAGTACGGGGGGCAGAAGTGCTCGGCCTGCTCCCGGATGTACGTCCCCGACTCCCTGTGGCCGCAGATCAAACAGGGGCTCCTCGCCGTGCATCAGCAGATCAAGCTGGGCAACCCTGTGGAGGACTTCAGTACGTTCTTCTCCGCTGTCATCGACGACAAGACTTCTAAAAACCTGACCGTTCTGGCGGGGGGGAATTGTGACAACAAGCAGGGGTACTTTGTGGAGCCCACTATCATTGAGACCAAGGACCCACAGGATATCATCATGAAAGAGGAGATCTTCGGCCCGGTGCTGACCGTGTATGTCTATCCCGAGAACGACTACAAGGAGGTACTGCAGCTCATTGACAACACGTCCCCCTACAGCCTAACGGGAGCTGTGTTTGCCCAAGACAAGAACGTCATCGACGAGGCCGCGAGGGCTCTGAGGAACGCAGCGGGCAACTACTACGTCAACGACAAGTCCACGGGCTCCATCGTGGGCCAGCAGCCGTTCGGGGGAGCGAGAGCTTCAGGGACCAACGACAAGCCGGGAGGCCAACACTACGTCCTGCGGTGGACCTCTCCCCAGGTGGTGAAGGAGACAAACGTTCCGCTGACAGACTGGAAGTACCCCTACATGGGTTGAGGTTGACCCCCACTTCACTCTTCCGAAGCTCTGCCAGAACCCACTTGACCCCTACCCCCGAGAAGCTGACTGGACTCTAGTAATTTACTACTGATCTTGTGAAACACAGAGAATacagaatgttctttttttttggatgaAGGAGTGTTGCTAACATTTCAAAGCGTTGCCTCAGCCCTGGCACGGGACATGGCTTAGAAATCGCTGAGCTAGGCTTGTTGCGCCAGAGCGGTGAAGGTTAAGACTCACCCCCTTCTGTGTGCCCTCCTGTGGGTTGGCAAAGGTGCAGACAGTGCAGCATAGGCAAGAGTTATGACATACAGTGTAATTGCACTctatattttaatagattttaacTAAACTAAAGAATCTGCTATTTTTGTTTACGTTGATGTGTGTAGTTccgggtgagagagagaaacagactgacATGGCTAATGTATCGTGACTACATCTGTCTCTGTCGGAGTTATCAGTGTTATACAGTGAGAACATCCGGCAGAAATCCTGTGCTACTGACCTGAGCTGCTGTATGAATGTATGGAAGATAAATGTCTCAATGGTGGTGCACTGAACA

Function

GO:

id name namespace
GO:0010133 proline catabolic process to glutamate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006561 proline biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function
GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity molecular_function

KEGG:

id description
K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151928 lncRNA upstream 646134 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 940458 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 988282 5227674 ~ 5228099 (+) True G121187
TU151864 lncRNA upstream 1011767 5202849 ~ 5204614 (+) True G121178
TU151862 lncRNA upstream 1013919 5201402 ~ 5202462 (+) True G121176
TU152159 lncRNA downstream 50688 6277518 ~ 6277900 (+) True G121402
TU152177 lncRNA downstream 100367 6327197 ~ 6327481 (+) True G121417
TU152324 lncRNA downstream 566146 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1334236 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1419888 7646718 ~ 7648316 (+) True G121688
AMCG00002175 mRNA upstream 8499 6200862 ~ 6207882 (+) True AMCG00002175
AMCG00002171 mRNA upstream 42475 6171079 ~ 6173906 (+) True AMCG00002171
AMCG00002168 mRNA upstream 47691 6120553 ~ 6168690 (+) True AMCG00002168
AMCG00002169 mRNA upstream 96330 6109219 ~ 6120051 (+) True AMCG00002169
AMCG00002170 mRNA upstream 111827 6100903 ~ 6104554 (+) True AMCG00002170
AMCG00002174 mRNA downstream 2306 6229136 ~ 6242079 (+) True AMCG00002174
AMCG00002184 mRNA downstream 57715 6284545 ~ 6285561 (+) True AMCG00002184
AMCG00002183 mRNA downstream 60387 6287217 ~ 6296247 (+) True AMCG00002183
AMCG00002180 mRNA downstream 89456 6316286 ~ 6324559 (+) True AMCG00002180
AMCG00002181 mRNA downstream 100054 6326884 ~ 6345200 (+) True AMCG00002181
TU151873 other upstream 992883 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2676827 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 2679953 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3256906 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4275565 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 359824 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 359824 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 1166970 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2526896 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3617450 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile