RNA id: AMCG00002174


Basic Information

Item Value
RNA id AMCG00002174
length 3870
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00002174
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6229136 ~ 6242079 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGACTCTGCCACCCTTGCCTCATTGCATGGCTTCTGTTTTGGGCATGCTGGGATCAGGGGGGTGCAGAGAGGCCCAATCTTCTTTCTCAGTTCTGGCTGGAGGGGGATTATGTGATAGCGGGTCTGTTTCCTCTGCACAACGCGGACAGGTCCACAAAACCTGTGCCGGAAATGGACGACTGCCGAAGGGGCACATTCAATAAGCATGGCTACCAGCTGATGCAGGCGATGAGATTCACCATCGAAGAAATCAACAATGGCAGCAGTAGGGACGGCCTGCTTCCAGGAGTTTCCCTTGGCTACCAAATCTATGACACTTGCACCGAGCCTGCTAGCATACTGGCCACCATTGACCTCCTGGTCCAACAGTCCAATTACTACAATGGCATTATTCCCAAATACACCGACTCCACCCGAGAGCAGATGATCACGATGATCAAAAAAATCATGCAGACCCATGTCAACACCATAGTGGTCTTCTCCAGCAAACGAATTGCCACCGGCTTCTTCCAACTGGTGGTGGAGCAGAACGTCACGGGGAAAGTGTGGATTGGTTCGGAAGACTGGTCAGTGTCCACCATGGTGTCTGGACTGCCTGGCATCCAAACCATCGGGAGTGTCCTCGGCATCGGGGTCAAAACCGCCAAGATGCTCGGCTTCCAAGAGTTTGGAGTTCTCGCTATGGAAGCGGCAGCATATGCGACTGGCAACTCATCTAATGACACGGGTGAAGTGGCCGGCCACGGGTTAAGGTGCCTGCAAGGCTGTGATCACATCCAGACATTGACCACCAGAGACATACCGTTAGAACTGTATGATATCCAGTCCTCCTACAACGTTTACAAAGCTGTGTATGCTCTGGCACATGCACTGCGCTCTTCCCTGGGCTGCAACTCGGGGAAATGCGCCAAAGAGGATGTCCAACCATTTAATCTTTTGGAAAACTTGAAACAAGTCAACTTCTCAGTGGGTGGCACATCCATGTATTTCGATCAGAATGGAGACCCCCCCACGGGTTATGATATCATGGCCTGGGACTGGGCAGGGGGGCAGTTGTCCCTCAGGGTGGTCGGCACATTCAGCCCTGACCCAGCAGATCTGAAAATCAACGCCTCCCTCATCAACTGGAACTCGGACAGCAAGGGCACAGTCCCGCAGTCCTTGTGTTCCCCAGACTGTCCCAAAGGTAGCAGGAGACTTCAGACTGGGTCTCATGTTTGCTGCTTTGACTGCCAGATCTGCCCAGTTGACACTTTCCTCAATAAGACTGGTTTGACCTTTTGCCAGCCGTGTCTGATTCATGAGTGGTCGCTGTCAGGGAGTGAAAGGTGTACCAACAGGACCGTGGTGTACCTCCCCTGGGCAGACTGGGTGTCGGTGGTCCTGCTCCTGGCCTCTGCTCTCACCCTCTTCCTGACGCTGGTCACCGCGGCCCTGTTCCTGGTGAACCTGAGCACGCCAGTGGTGAAGTCCGCAGGCGGGCGGACGTGCCTGGTGATGCTGGCCTCTCTGGCGGTGGCCACCTGCAGCACCTTGTGCCACTTTGGCGTTCCCACCCTGCTGGCCTGCATCCTCAAGCAGTCCCTCTTCACCCTCAGCTTCACTGTCTGCCTCTCCTGCATGGCCGTGCGCTCCCTCCAGATCGTGTGCATCTTCAAGATGTCCGCCAAGCTTCCCAGGGCCTACGAGGTGTGGGCCAGGAACAACGGGCCCTCGATCGTGATCATCGTCTCGGCTGCCACCGAGCTCTTCATCTCGCTGATGCACGTTCTCGAGGAGCAGCCATCCCCCACTGAGGTGTATAATATCTACCCTCACGCCATCCTCCTGGAGTGCACTGTGCTGGCAAGTGTGCTGGGGATTCTGGGAGGTTATTTCCTGCCCAAGGTGTATATCATTGTGCTAAAACCCCAGCTCAACACGGCGGCTCATTTCCAGAACTGCATTCAGATGTACACCACGAAGAAGACGTGTTTGCCCCTAAAGTTCAATAAGCCTGGAGACTATCTCATTGGAGGACTTTTGACCTTGTGTCAATCTCCTTCACACGTCACCTTGAATATGACACACTGCAAATGTGAAAAAATGTATGCGGCCGGATGCCAGATTCTTCAGCTGCTGGACCTCACGTTGGCCGAAATCAACAACTCCACTCAGCTCCTTCCCAACATCTCTCTGGGCTACCAGGTCTTGGACTGCTCCCTCGACACAGACTGCCTGGACTCCACTCTGTTGTTCCTGagcaacaagaaaacaatgtacGTGGACTCGCAGCCACTGATGTACAAGAAGCAGACCGACATCAAGGCGATCTTCGGACCCTCTTACAGTGCCACGGCTCTGGGAATAGGCGGAATTGTTGGTGCTTTTCAAGTACCTTTGaTTTCCGCCTCAGCCACCAACCAGAAACTGAGTAACAAGGAGCTGTACCCTTCGTTCATGCGCACCACTCCCAATGACAAGAATTTAGTGTTGGCAATACTGCAGTTCTTGAAAGGGATTGGCTGGAAATGGGTGTCTCTGTTGGTCAGTGCCGATGACTACGGCAGTGATGTGGGTAAGAGCTTTACTGAGCTGGCCCCTGAGTACGGGGTTTGTGTCGCGTACAAGGGGGTCTTAGCGATTGGGTCTAATGAGGAGATAGAGGCAAGCGCCCAGGAGTCAGTCAAGAAAATGATTTTCTTCAAAACGAAGATCGCTGTGATCCTCTCTGTCTCTAAGAGTATTGTGGGTTTCTACACAGTTGCTCTCCGAGAGCCAGCCTTGAGAGACAAAGTGTGGCTCAGCAGTGATACACTGTCGAAGATACCCATGATATTAGAAATACCTGGATACAAGAGACTGGGCACCCTTATAGTTTTTGGAAATATTCAAGTGCAGGTCCCTGAAGATTTCATGGCCAGACTTCAAAAACACACGGAGCCGCCGGTATTGCCACTCACTAAAGATGGGCTTCCCACACTACCACAATGTGATGATTGTAGAGTGAACTTCTCTGCACAACAGATATCACAGGAAGTGTTAAGGTTGCAGTCTGCTGTGTACACTATTGCCCATGGCATACATAAATTGCTCAGCTGCGACTccaaaaactgcattaaaagAGATTTTTTGCCCAAAGAGACGGGTAAATCATCGTGCTCTGATGACTGCCAGCCCGGGcacagaaaacaacagacaGGACTCCACCGATGCTGCTGGGAGTGTAAAGTCTGCCCAGAAGGAACTTTCTTCAACACAAGTGATGAGTACAACTGCCATCTCTGCCCCAAGGCACACTGGTCTCCACAGGGGAGTGAGCGCTGCTTCCCGCGTACACTGCGGTACCTGTCCTGGGACAGTGGGATCGGCGTGGGGCTACTGGTGTCCACTTCAGCAGTGCTCCTGGTGGTGGTGGCCACAGGGGCCGTGTTCGCCCTAAAACGCCATACGCCGGTGGTGCGGTCTTCCGGGGGCAAGATGGCCTTCATCATGTTGGCCTCCCTTCTGTCCTCTTGCATCTGCCTGTACGGTAACTTCGGCATGCCCTCCACGCTGTCATGTCACTTCCGCACTCTCTCCGAATTGTGTTTCACTGTCTGCTTGGCCTGCATCGCCGTGCGCTCCTGCCAGCTCCTGTGTATCTTCAAACTGGCTGCCAAGCTCCCGAAAGCTTGCGATTTCTGGATCAAAGACCGGGGCCAGTATGTCCTCATCTTTCTGTGTACGGTCCCCCAGGTGGTGATTTCCATTTACCTCATTACTGGGGATGTCCCGGTCCCGGAGTACTTTGAGAAAGACATGGTTTTACTAACGCCAGAGCTGAACACAACGGCCCATTTTCAGAGCTGCATTCAGTTGTACACCATGCAGAAATCCACACATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151928 lncRNA upstream 658889 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 953213 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 1001037 5227674 ~ 5228099 (+) True G121187
TU151864 lncRNA upstream 1024522 5202849 ~ 5204614 (+) True G121178
TU151862 lncRNA upstream 1026674 5201402 ~ 5202462 (+) True G121176
TU152159 lncRNA downstream 35439 6277518 ~ 6277900 (+) True G121402
TU152177 lncRNA downstream 85118 6327197 ~ 6327481 (+) True G121417
TU152324 lncRNA downstream 550897 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1318987 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1404639 7646718 ~ 7648316 (+) True G121688
AMCG00002176 mRNA upstream 2306 6216381 ~ 6226830 (+) True AMCG00002176
AMCG00002175 mRNA upstream 21254 6200862 ~ 6207882 (+) True AMCG00002175
AMCG00002171 mRNA upstream 55230 6171079 ~ 6173906 (+) True AMCG00002171
AMCG00002168 mRNA upstream 60446 6120553 ~ 6168690 (+) True AMCG00002168
AMCG00002169 mRNA upstream 109085 6109219 ~ 6120051 (+) True AMCG00002169
AMCG00002184 mRNA downstream 42466 6284545 ~ 6285561 (+) True AMCG00002184
AMCG00002183 mRNA downstream 45138 6287217 ~ 6296247 (+) True AMCG00002183
AMCG00002180 mRNA downstream 74207 6316286 ~ 6324559 (+) True AMCG00002180
AMCG00002181 mRNA downstream 84805 6326884 ~ 6345200 (+) True AMCG00002181
AMCG00002179 mRNA downstream 114326 6356405 ~ 6360644 (+) True AMCG00002179
TU151873 other upstream 1005638 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2689582 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 2692708 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3269661 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4288320 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 344575 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 344575 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 1151721 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2511647 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3602201 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile