RNA id: AMCG00003468


Basic Information

Item Value
RNA id AMCG00003468
length 312
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00003468
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4541643 ~ 4543761 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGGCTTATATCTTGGCTCGAGAGAACGCTGTTCGCGGGTGGCGGGAGCTGATGGGACCCACCAGAGTTTTCCAAGCTCGATATACAGCCCCTGAGACCATACGCGGCATCTACGGACTCACTGATACCAGGAATACCACACACGGCTCAGACTCAGAGGAGTCGGCCGCGCGGGAGATTGCCTTCTTCTTCCCCGAGTTCAGTGTGAAGCAGTGGATGGAGAAGGAAGAGCCTCTGTTCAGGGCTGGGTGTGTTGTTTACGACCAGCAGAAGCAGATTCACACCCTCAAAGAAGAGTTTCTGCCATGA

Function

GO: NA

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU893 lncRNA upstream 21010 4515348 ~ 4520633 (+) True AMCG00003469
TU889 lncRNA upstream 57373 4483890 ~ 4484270 (+) True G742
TU878 lncRNA upstream 86501 4452564 ~ 4455142 (+) True AMCG00003473
TU830 lncRNA upstream 161824 4326653 ~ 4379819 (+) True G690
TU824 lncRNA upstream 166704 4296559 ~ 4374939 (+) True G684
TU905 lncRNA downstream 9137 4552898 ~ 4553645 (+) True G752
TU992 lncRNA downstream 788748 5332509 ~ 5334752 (+) False AMCG00003480
TU1087 lncRNA downstream 1006984 5550745 ~ 5556306 (+) True G907
TU1088 lncRNA downstream 1013846 5557607 ~ 5558515 (+) True G908
TU1140 lncRNA downstream 1285698 5829459 ~ 5829745 (+) True G960
AMCG00003469 mRNA upstream 19243 4514031 ~ 4522400 (+) False AMCG00003469
AMCG00003474 mRNA upstream 69912 4471337 ~ 4471731 (+) True AMCG00003474
AMCG00003473 mRNA upstream 88090 4452949 ~ 4453553 (+) False AMCG00003473
AMCG00003467 mRNA upstream 106176 4427711 ~ 4435467 (+) True AMCG00003467
AMCG00003465 mRNA upstream 175411 4350519 ~ 4366232 (+) True AMCG00003465
AMCG00003475 mRNA downstream 145723 4689484 ~ 4695337 (+) True AMCG00003475
AMCG00003478 mRNA downstream 631254 5175015 ~ 5187273 (+) True AMCG00003478
AMCG00003480 mRNA downstream 759689 5303450 ~ 5334288 (+) True AMCG00003480
AMCG00003481 mRNA downstream 791730 5335491 ~ 5339847 (+) True AMCG00003481
AMCG00003485 mRNA downstream 835267 5379028 ~ 5402540 (+) True AMCG00003485
TU1202 other downstream 1943931 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 4105364 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 4712067 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 5233747 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 6946424 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile