RNA id: AMCG00003481


Basic Information

Item Value
RNA id AMCG00003481
length 2194
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00003481
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5335491 ~ 5339847 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGCACGGCAGCGGCGGAAGTGAGCTCTCGGCGAGGCCGGAAATACGTCATGAGTGCCGGCCGAGGTCAGACAGGATGGGCAGCGCGGCGTGTGCGGCGGGGACTCTGCGCCTCTCACTGCGGAGTCTGCAGGTGATGTCAACAGAATGAGCACCGGGGCTTATTATTGCTTTAGGTCAGCTGTGAGTCCAGCCTGCGTGTGGTTATTAAAGCAGCGCGGCAATGTCATGTCCTCAGTAACCGGTGGAGCTACTCGTAGTCCTGTACAGTGCGGACAGTCATGCATGTCAGTAGCTCTTGCCCGCGACTTTCTCGCTGGTGCATTTGAATGTGTTTCACTGGGCTGGTATTGCATTGTTTGTAATAGGTTATACACGGAAGTCCCCACCGATCCTTACTGTAGAGCCGGTGCGTTAACCTTACATAGGCGGTACAGCTCACACTGAGTTAACAGTCACTGTCTGCACCGCGGGAGTAATGTGCGCTTTATGTGATCCATCCGTGCAGGCCACAGCGCTGCTGAGAGCTCGCGCCTGCGCACCACGGCACCTCTGGAGCGGCCGGCTCCTCTCATTATCTCCAGCAGCAGGACTCCACACCACGGCCCCTCGCTGCTCCGCGCCTCCCGCTATCAGAGAGACCGAAGAGCCCGACCAGCTGTACGAGAGCGTGTCGGTTCTGGTCAAGGGCCACGACCGAGCTGTCCTGGACAGCTATGAGATCTTCGCTACTCTGGCTGCTCAGGAGTTGGGCCTGAACGTTGTCAAAGTatttgagcCCCCAAAGAAGATTGAGAGGCTGACCCTTCTGAAGTCTGTCCACATTTTTAAGAAGCACAGGGTCCAGTATGAGATGAGGACCCATCATAAGTGCATTGAGCTGAAGCATCTGACCGGCTCCAGCAGCGCTGTGTACCTGGAGTACCTGCAGCGCAACCTGCCCGAGGGTGTCGCCATGGAGGTCACAAAGACTGCCATAGAGAAGATCCCGGCGCATGTGAAGCAGCCCTTGTGGAGCTCTGTTCCCCTGCAGGAGCAGCCCAGCCCCTGAGGGGGGGAGACCGCAGTGCCCTGTCCCTCATGAAACCCAGTGAGGGCAGTTCTCCAGAATCCAGGTCCAGCTGTGGATTCAGTTTAACACTTCCCAAACCAGTACTCCCCCCCCGCCCATAACCACAAGAGCCGACGATGGGCTCCTTAAAAAGACTTCCTGCAGAGAGAGCTTTAATCGCATCACAGGAGTCCAGCTGCTGCTCAGTGGTGActtctcctgtctgtctgtgtgcaggagTGTCTTTGTCCAGGACCCTGCTGCTCTCAGACATGTCGGTATGTCCTGCATGCCCACAGAGACCAGGCCGCTCTCCAGCACATCCCAGGCCTGTGCCGTCCTCCGTGATTAAGCATTGTGTTCAATGGTGGTCTGGTAATAAAGctatttaatttccttaaagGCAAGTTGCATCTTTCTTGTCATGCCTGCATTACAGAAGGCTTGGGCTGGTAGAACCCCATTAGGGAAGGGACCCACATCAGTCTGTGCATCTGGCGACCGTCGGCCCATTTCAGTGGCGTTCTGCGAATGCAGGTGGATTCTCTGAGCTGCCTTTAGCACCTGCTGTTTAATGTCAATGTGGTGGAAGCGGATTTATTATATTGCTGGGTGACTTCAGAACGTGCAGATGTGTGATTTCACTGCTGGACAGCAACATTTATTTGCTACATAAATAATGGGGGGAGAACTGTGTAAATCCAAAACTGGCATTATTCACCACAATACGCAGAACCTTCCTGAGCATTGAAATTGCTTGACATCTCCTGTCCTAGTATGTGTTGCTACATCACAGGAGAGGAAGGACTGCGTTTTGATTGCTTTGGTTGTCATGCGTTACAGTGTGACGGACTCATCGATCCAGAGGGAAATGCCTGCTGTCACACGTCTGTGTTCTGCTTTCATCTAATAACACTCAATGTCTGGTGCGAGCGCTTCCGTAGAGCAGCGTCTACATCGTCATTCGAACAGGATCAAACTGTGGCCGAGCTGCCCTTCACAGCTGTGGAGAGGATGTGATGATTGACATGTTTTTATGGTATTGCAGATATTGATATTAAATAGCGTTCAATTTACCAATCGAATTATATCTGCAGATTTGactcctgtgtttgtgttttaataaccTAAACAAAGTAGAAC

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02946 RP-S10, MRPS10, rpsJ; small subunit ribosomal protein S10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU992 lncRNA upstream 739 5332509 ~ 5334752 (+) False AMCG00003480
TU905 lncRNA upstream 781846 4552898 ~ 4553645 (+) True G752
TU893 lncRNA upstream 814858 4515348 ~ 4520633 (+) True AMCG00003469
TU889 lncRNA upstream 851221 4483890 ~ 4484270 (+) True G742
TU878 lncRNA upstream 880349 4452564 ~ 4455142 (+) True AMCG00003473
TU1087 lncRNA downstream 210898 5550745 ~ 5556306 (+) True G907
TU1088 lncRNA downstream 217760 5557607 ~ 5558515 (+) True G908
TU1140 lncRNA downstream 489612 5829459 ~ 5829745 (+) True G960
TU1170 lncRNA downstream 615757 5955604 ~ 5955820 (+) True G983
TU1177 lncRNA downstream 646191 5986038 ~ 5986394 (+) True G990
AMCG00003480 mRNA upstream 1203 5303450 ~ 5334288 (+) True AMCG00003480
AMCG00003478 mRNA upstream 148218 5175015 ~ 5187273 (+) True AMCG00003478
AMCG00003475 mRNA upstream 640154 4689484 ~ 4695337 (+) True AMCG00003475
AMCG00003468 mRNA upstream 791730 4541643 ~ 4543761 (+) True AMCG00003468
AMCG00003469 mRNA upstream 813091 4514031 ~ 4522400 (+) False AMCG00003469
AMCG00003485 mRNA downstream 39181 5379028 ~ 5402540 (+) True AMCG00003485
AMCG00003487 mRNA downstream 123912 5463759 ~ 5506907 (+) True AMCG00003487
AMCG00003495 mRNA downstream 412296 5752143 ~ 5753261 (+) True AMCG00003495
AMCG00003498 mRNA downstream 427511 5767358 ~ 5769937 (+) True AMCG00003498
AMCG00003497 mRNA downstream 484734 5824581 ~ 5825732 (+) True AMCG00003497
TU1202 other downstream 1147845 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 3309278 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 3915981 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 4437661 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 6150338 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile