RNA id: AMCG00003474


Basic Information

Item Value
RNA id AMCG00003474
length 297
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00003474
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4471337 ~ 4471731 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTTCTTCCCGTTTGTGTACAAGGGAGAGTCTTACAACTTGTGCATTGCAAAGGACAGCACGTACGGATATTGGTGTTCACAGACCAGCAATTTTGACAAGGACCAAAAATGGAGTTACTGTACTGCCTTTGGAGTTGGTGCACAAAGCCAACGATACAAGCAATGTGTATTCCCCTTTATGTACAAAGGGACGTCATACACCTCATGTACTAAAAGTGGCAGCCTTAAAAAATGGTGCTCTATAACCACCAACTACGATGTGGAAAAACAGTGGGGGTACTGTCCTGATGGTACA

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU878 lncRNA upstream 16195 4452564 ~ 4455142 (+) True AMCG00003473
TU830 lncRNA upstream 91518 4326653 ~ 4379819 (+) True G690
TU824 lncRNA upstream 96398 4296559 ~ 4374939 (+) True G684
TU778 lncRNA upstream 381018 4086896 ~ 4090319 (+) True G646
TU774 lncRNA upstream 495298 3975753 ~ 3976039 (+) True G642
TU889 lncRNA downstream 12159 4483890 ~ 4484270 (+) True G742
TU893 lncRNA downstream 43617 4515348 ~ 4520633 (+) True AMCG00003469
TU905 lncRNA downstream 81167 4552898 ~ 4553645 (+) True G752
TU992 lncRNA downstream 860778 5332509 ~ 5334752 (+) False AMCG00003480
TU1087 lncRNA downstream 1079014 5550745 ~ 5556306 (+) True G907
AMCG00003473 mRNA upstream 17784 4452949 ~ 4453553 (+) False AMCG00003473
AMCG00003467 mRNA upstream 35870 4427711 ~ 4435467 (+) True AMCG00003467
AMCG00003465 mRNA upstream 105105 4350519 ~ 4366232 (+) True AMCG00003465
AMCG00003463 mRNA upstream 181389 4280112 ~ 4289948 (+) True AMCG00003463
AMCG00003457 mRNA upstream 402275 4065461 ~ 4069062 (+) True AMCG00003457
AMCG00003469 mRNA downstream 42300 4514031 ~ 4522400 (+) False AMCG00003469
AMCG00003468 mRNA downstream 69912 4541643 ~ 4543761 (+) True AMCG00003468
AMCG00003475 mRNA downstream 217753 4689484 ~ 4695337 (+) True AMCG00003475
AMCG00003478 mRNA downstream 703284 5175015 ~ 5187273 (+) True AMCG00003478
AMCG00003480 mRNA downstream 831719 5303450 ~ 5334288 (+) True AMCG00003480
TU1202 other downstream 2015961 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 4177394 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 4784097 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 5305777 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 7018454 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile