RNA id: AMCG00003478


Basic Information

Item Value
RNA id AMCG00003478
length 1608
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00003478
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5175015 ~ 5187273 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTATCTTTTGAACACTCAGATGAATGTCCAGTCTGATCTGGTGGCGGACTTTGAACATGTGGACAAGGTGTTCTGTCACGAGAGGTCTCACTCCCACGCCGAAGAGGAGCTCTTCAAGAAGCTGTTCATCGGCTACAACAGATGGTCCAGGCCCGTTCCAAACATCTCCGACGTCGTCATTGTCAAGTTTGGCCTCTCCATTGCCCAGCTGATTGATGTGGATGAGAAGAACCAGATGATGACCACAAATGTTTGGCTGAAGCAGGAGTGGAATGACTACAAGCTGCAATGGAAACCGTCAGATTATGACAACGTCACGTCCATCCGTGTGCCCTCCGAGATGATCTGGGTGCCGGACATCGTGCTGTATAACAATGCTGATGGCGAGTTCGCAGTGACCCACATGACCAAAGCCCACCTGTTCTACACGGGCATGGTGCAGTGGGTGCCCCCTGCCATCTACAAGAGCTCCTGCAGCATCGACGTCACCTTCTTCCCCTTTGACCAGCAGAACTGCAAGATGAAGTTCGGCTCATGGACCTACGACAAGGCCAAGATCGACCTGGAACGCATCGAAAACACTGTGGACCTCAAGGACTATTGGGAGAGTGGGGAGTGGGCCATCATTAATGCAGTGGGCACCTACAACACTAAAAAGTATGACTGCTGCCATGAGATCTACCCCGACATTACATACTTCTTCATCATCCGTCGGCTGCCCCTCTTCTACACCATCAACCTCATCATCCCCTGCCTGCTCATCTCCTGCCTGACCGTGCTGGTCTTCTACCTGCCCTCAGACTGCGGCGAGAAGATCACCTTGTGCATCTCCGTGTTGCTGTCCCTCACTGTGTTCCTGCTGCTCATCACTGAGATCATCCCCTCCACCTCCCTGGTCATCCCCCTCATCGGCGAGTACCTACTCTTCACCATGATCTTCGTCACGCTGTCCATTGTCATCACCGTCTTCGTGCTCAACGTGCACCATCGCTCGCCCAGCACCCACAAGATGCCCCGCTGGGTGCGCAGCGTCTTCCTCGAGTTCATCCCCCGCTGGCTGTTCATGAAGCGGCCCACCCCGGACGAGAAGCATCGCcgcctcctgcagcagcagcagcaggaccaGAGCGACACCAAGCTCAGCACCTCTAGGTACTGGCTGGAGACCGACGTGGACCTCAAGTACAGCGACGCCGAGCTGGGCAtcccctccttctcccccccTCCCGCCGGCGCCGCCTCGGCCCGCCTGCCCACGTCCACCCACAGCCCCCTCCCGCAGAAACACAGCCTGCACCACCGACTAGAAGGAATGGCTCGCCAGCTCGGGGGCCGGGTCAACCCCACCCAGCGCCCTGCCAAGATAGACAACCTGGTGTCCGACCCCAACTTCCCCTTCTCCCCCAGCATCCTGCGGGCCCTGGAGGGAGTGCACTATATCGCAGACCACCTCCGGGCAGAAGACGCAGACTTCTCTGTGAAGGAGGACTGGAAATACGTCGCTATGGTGATTGACCGCATTTTCCTGTGGATGTTCATCATCGTGTGCTTGTTGGGTACGATTGGGCTCTTCCTCCCACCCTGGCTCGCCGGGATGATCTAG

Function

GO: NA

KEGG:

id description
K04804 CHRNA2; nicotinic acetylcholine receptor alpha-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU905 lncRNA upstream 621370 4552898 ~ 4553645 (+) True G752
TU893 lncRNA upstream 654382 4515348 ~ 4520633 (+) True AMCG00003469
TU889 lncRNA upstream 690745 4483890 ~ 4484270 (+) True G742
TU878 lncRNA upstream 719873 4452564 ~ 4455142 (+) True AMCG00003473
TU830 lncRNA upstream 795196 4326653 ~ 4379819 (+) True G690
TU992 lncRNA downstream 145236 5332509 ~ 5334752 (+) False AMCG00003480
TU1087 lncRNA downstream 363472 5550745 ~ 5556306 (+) True G907
TU1088 lncRNA downstream 370334 5557607 ~ 5558515 (+) True G908
TU1140 lncRNA downstream 642186 5829459 ~ 5829745 (+) True G960
TU1170 lncRNA downstream 768331 5955604 ~ 5955820 (+) True G983
AMCG00003475 mRNA upstream 479678 4689484 ~ 4695337 (+) True AMCG00003475
AMCG00003468 mRNA upstream 631254 4541643 ~ 4543761 (+) True AMCG00003468
AMCG00003469 mRNA upstream 652615 4514031 ~ 4522400 (+) False AMCG00003469
AMCG00003474 mRNA upstream 703284 4471337 ~ 4471731 (+) True AMCG00003474
AMCG00003473 mRNA upstream 721462 4452949 ~ 4453553 (+) False AMCG00003473
AMCG00003480 mRNA downstream 116177 5303450 ~ 5334288 (+) True AMCG00003480
AMCG00003481 mRNA downstream 148218 5335491 ~ 5339847 (+) True AMCG00003481
AMCG00003485 mRNA downstream 191755 5379028 ~ 5402540 (+) True AMCG00003485
AMCG00003487 mRNA downstream 276486 5463759 ~ 5506907 (+) True AMCG00003487
AMCG00003495 mRNA downstream 564870 5752143 ~ 5753261 (+) True AMCG00003495
TU1202 other downstream 1300419 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 3461852 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 4068555 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 4590235 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 6302912 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034368 False 3227 mRNA 0.43 6 NC_007131.7 19793620 ~ 19824515 (+)
grasscarp (Ctenopharyngodon idella) CI01000325_00986217_00993874.mRNA True 1905 mRNA 0.49 5 CI01000325 986217 ~ 994193 (+)