RNA id: AMCG00003525


Basic Information

Item Value
RNA id AMCG00003525
length 1125
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00003525
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7518051 ~ 7531125 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAACTCGGACCCCTGCAAACAAAGCCACTGATCAGCCGCAGtttctacatttaaataatctagCTTGTGAGGCAGCGGGAGGAAAGgttcTTTTTGCTACAGATGAATGGTTTGCATCTGCACAAAACCTTTTAAAGAGAGAGCCAGTGGAGTTTAAAGTGGATGCTTTCACACAGTTTGGTAAATTGATGGATGGCTGGGAGACAAGGAGAAAGAGAATTCCTGGTCACGACTGGTGCATAGTTCAACTGGGTGTCCCTGGAATCGTTCAGGGATTTGATATCGACACATCCTATTTTACAGGAAACTATGCCCCATCTGTCTCCATTCAGGCAGCTTCTTTGAATCAAGATGAGATTCCAGCTTTCAAACCTCAAGGGGATCGGACAGGAACAGCTGCTTCAGAAGAAGAGTTTAAAGCTGCTGCAAAgCTACACTCTGAATGCTGGGAGGAGCTGGTTCCAGTTTCACAGCTGAAGCCTGGCTATGTTGACACTTGTCATAATTACTTTTCTGTAAACACCCAACAGAGGTTCACTCATATTAGACTCAACATGTATCCAGatGGAGGAATTGCACGCCTAAAAGTATATGGCATTGGACAGAGAGATTGGTCTGTAGTATCCTATAATGATCACGTGGACTTGGTAGCACTGACAAATGGAGGAGTGTGTGTGGGATACAGTGATGCTCATTTTGGTCACCCACGCAATATGATAGGATTAGGAAGGGCTATAAATATGGGTGATGGCTGGGAGACTGCCAGACGACTTGACCGGCCAGCAATTTTAAAGGTGGATCATAAAGGTATACTACAAGTGCCGGGCAGCGAATGGGCTGTTTTTAAACTGGGCCACCCTGGGAACTTTCCAGACTCCTGTAAAATTGAGGGATGCACCTTGGCACCAGAAGAAGAGAATGAATACATTAGCGTGAAATGGAAAGCAGAGTGGAAGATTCTTCTGCCACCTCAGAAGctCAAACCCCATCACAGACACTTCTTCTCTGCTACCTCAATAGAGCTGACTGAAATTGTCACTCACGTGCGTCTCATTATTGCTCCTGATGGTGGAATAAGCAGGATGCGCCTGTGGGGATTCCCAAGGGCTCTGTCTTCATAA

Function

GO: NA

KEGG:

id description
K01477 alc, ALLC; allantoicase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445 lncRNA upstream 19707 7498067 ~ 7498344 (+) False AMCG00003524
TU1436 lncRNA upstream 28170 7489445 ~ 7489881 (+) True G1218
TU1403 lncRNA upstream 152574 7364944 ~ 7365477 (+) True G1187
TU1358 lncRNA upstream 444442 7073404 ~ 7073609 (+) True G1146
TU1177 lncRNA upstream 1531657 5986038 ~ 5986394 (+) True G990
TU1479 lncRNA downstream 265326 7796451 ~ 7796854 (+) True G1253
TU1499 lncRNA downstream 744637 8275762 ~ 8276983 (+) True G1271
TU1519 lncRNA downstream 809141 8340266 ~ 8340592 (+) True G1291
TU1531 lncRNA downstream 912615 8443740 ~ 8444024 (+) True G1303
TU1573 lncRNA downstream 1129907 8661032 ~ 8666927 (+) True G1343
AMCG00003521 mRNA upstream 3641 7505463 ~ 7514410 (+) True AMCG00003521
AMCG00003524 mRNA upstream 14036 7498040 ~ 7504015 (+) True AMCG00003524
AMCG00003527 mRNA upstream 35845 7466921 ~ 7482206 (+) True AMCG00003527
AMCG00003529 mRNA upstream 58575 7453411 ~ 7459476 (+) True AMCG00003529
AMCG00003522 mRNA upstream 79604 7422803 ~ 7438447 (+) True AMCG00003522
AMCG00003526 mRNA downstream 1428 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003530 mRNA downstream 447650 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003532 mRNA downstream 753702 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003533 mRNA downstream 785913 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003534 mRNA downstream 1118032 8649157 ~ 8652470 (+) False AMCG00003534
TU1202 other upstream 1023146 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 1118000 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 1724703 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 2246383 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 3959060 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 4042606 11573731 ~ 11577329 (+) True G1989

Expression Profile