RNA id: AMCG00003534


Basic Information

Item Value
RNA id AMCG00003534
length 2343
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00003534
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8649125 ~ 8652470 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCGGGGGGGACGCAGCACAGGAAGACAACAACACCCGCATCTCCGCTCTCGTCCGAAGTGAAAACATGAAAGCAATAAGCCCGGTGCGCTCTTTCCGGAAAAACAGCGGCAACTTTCCCGAGCACAGCCTGGGGATCTCCCGCAGCAAAACCCCCGTGGATGATCCTTTAAGTCTCCTCTACAACATGAACGACTGCTACTCCAAGCTGAAGGAGCTCGTCCCCAGCATCCCGCAGAACAAGAAGGTGAGCAAGATGGAAATCCTGCAGCATGTCATCGATTACATCCTGGACCTGCAGATCGCACTGGACTCGCACTCCGCCATGGCCAGCCTGCACCACCAGCGGCCAGGGCAAGCGCCGGCCAGGACCCCCCTGACGGCTCTCAACACAGACATCAGCATCCTCTCCTTACAGTCGGCTGAATTCCCAACAGAGTTAATGACAGATGACCGCAAGACGCTCTTTCGCTGAACTGGCTCGTTATAATATTCCCAAGAGTGGGAGCTGAAAGGAAAGAGGATCATCGCAAGGAATCGCCCATCAGAAGTCTTTGCCTTTTTTTGCAAAGGTGGAGCGTGAATAGAAGACAACTGGGTTAGTTGCTTTATAAAGTTTAGTCTGTCTTGTCAGAATGGTTACTTTTTTGGCACGTTAAGGACTGGACGTcgtgaaaaactaaaaacctaaaaaaaaaaaaaaaaaacccctaaaaaaaaaacaaaaaaaaaaaaacgtttgcGTGAAACCTTGTGAACTCTGTAATTGGAGTTGATCTTGTATAGTTGCAGAGATTGTACATTTCTGCAGACGATGTAATGCTGTACTTAATTATGCTGAAACTTTTTATAAAAGTAATATTGTAAATTGTAccttttttatacaaaataaatcaaatgctttatttgaatgtgtctcCCCTTAGCTTTGGTACCTTTTCTCTGTGGATGGATTCACACCCAGGATATGATCGCATGACTAGCCACATTTGTTGATggtttttttaaattcctgtaAGAGTGTACTGTGTTAAACtagtttgtttcattgtttgtttcaattgtgTAAATGTCTCTCTTAATATATGCCATACACGCACGAAACGCCCAATCACTTCTAACATGTGAAATATACAAAGTGACAATGTTTATGGAGATCTATTGCTGTCTGGAAACTGTTCTATGTAATAAACCTACATCTCAGTGGGTACTGCTAGAGTAAATTATGCCTCAGGATTTGTAGCATCTGACCCCCTTATCTCCCAGAACAAAAATGTAGTTAAAGTATACCTCAAAAGGGTGCATCTATATTTCCTAAACCAGTGCAAAGGTAtttcctggggggggggggggtgaatagttctTGAACCCTGAGCACATTTTCCCCGTTGGTTTATTACAATGAAATGGTCTTGTGCTCCAATTGTTAATTCAGCACTATAAAGTCGAGCAGGTGATCATAATAAAACCCATTCCCACTTAACTCCTTTCGATGGTTCTGGTATACTTGCGTAAGGATGCCGATAATGAAACTGGGCGCCAGCAATAGTTGCGTCGCACGTCGCATTCACGCAATCCTGCGCCATCCGGGCTGCAGCGCAGATGTGCccagttctgcgcggctccaccaatgggctCGATGCGGCCGCGCAGATCTGCGTCCATCTGCGCTGCAAGGACGCCAGCGGGGTGCCATTCCCTGCCCTTGCCACGGCTGGCTTTATCCGCAGGGAGAGCTCTCTGGTCCTCTACCATCAACCTCACCCCCACAAACTGCACCAAACAAACCGGCACTGGCAACTACTGGAAAACCCAGTGGAAACCCCAAACCATCCAGCCATGCCTGTGGCTCTTATCCAATGCGtcttcagtttcagtttatGTTAAAGGTCCCTTTGTGCAAAACTAGTCCTTCTCAGGTTtggaccaaaacaaaatgtaaacccaACAAGATGATAAAGTGAGGTCTGAAATCTTGCGTTCAGCAGCCCATAACCGCTCATCTGTAGCATTTGGAGGGACGGATAAAACGCAGGGTGAATGGCGCCCCCTAACTAACCCACACACAGTTGTGCTGTACATGAGCCAGAccaataaaaaagaacaaacatcatgtattcatttattttgtatttaactgGATTCCCCTAATTCAAATCAGTCAAACTCTTTAAAACAGTTGATAAAAACCCATGTGTGTCAATGAGAAGTCAATAACATTCATATCACTGATTAACTGGCATTGCTTCACGTTGTTTTAATACCTATTTAGATCAAAGTGCCCATAAAAATACCAAACACTAAAACGGATGATTCCAGTGTATTCTTGagtactgtatttgtt

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1531 lncRNA upstream 205133 8443740 ~ 8444024 (+) True G1303
TU1519 lncRNA upstream 308565 8340266 ~ 8340592 (+) True G1291
TU1499 lncRNA upstream 372174 8275762 ~ 8276983 (+) True G1271
TU1479 lncRNA upstream 852303 7796451 ~ 7796854 (+) True G1253
TU1466 lncRNA upstream 898692 7523861 ~ 7750465 (+) True G1241
TU1573 lncRNA downstream 8562 8661032 ~ 8666927 (+) True G1343
TU1577 lncRNA downstream 46996 8699466 ~ 8700554 (+) True G1347
TU1613 lncRNA downstream 191357 8843827 ~ 8844082 (+) True G1375
TU1625 lncRNA downstream 287681 8940151 ~ 8941751 (+) False AMCG00003541
TU1675 lncRNA downstream 356827 9009297 ~ 9022573 (+) True G1430
AMCG00003533 mRNA upstream 311507 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003532 mRNA upstream 356939 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003530 mRNA upstream 668960 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003526 mRNA upstream 1101603 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003525 mRNA upstream 1118032 7518051 ~ 7531125 (+) True AMCG00003525
AMCG00003535 mRNA downstream 166942 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003541 mRNA downstream 247986 8900456 ~ 8941678 (+) True AMCG00003541
AMCG00003542 mRNA downstream 305671 8958141 ~ 8959534 (+) True AMCG00003542
AMCG00003539 mRNA downstream 313241 8965711 ~ 8977843 (+) True AMCG00003539
AMCG00003540 mRNA downstream 327130 8979600 ~ 8982021 (+) True AMCG00003540
TU1202 other upstream 2154252 6487692 ~ 6494905 (+) True G1012
TU1763 other downstream 603358 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 1125038 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2837715 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2921261 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 4384967 13037437 ~ 13042597 (+) True AMCG00003648

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000062_02724898_02725662.mRNA True 2013 mRNA 0.42 2 CI01000062 2723979 ~ 2726153 (-)