RNA id: TU1569


Basic Information

Item Value
RNA id TU1569
length 2548
RNA type TUCP
GC content 0.48
exon number 3
gene id AMCG00003534
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8649125 ~ 8652470 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGCCGGCTGCTTCAGTCCGTACACTAACAATCGGGGGGGACGCAGCACAGGAAGACAACAACACCCGCATCTCCGCTCTCGTCCGAAGTGAAAACATGAAAGCAATAAGCCCGGTGCGCTCTTTCCGGAAAAACAGCGGCAACTTTCCCGAGCACAGCCTGGGGATCTCCCGCAGCAAAACCCCCGTGGATGATCCTTTAAGTCTCCTCTACAACATGAACGACTGCTACTCCAAGCTGAAGGAGCTCGTCCCCAGCATCCCGCAGAACAAGAAGGTGAGCAAGATGGAAATCCTGCAGCATGTCATCGATTACATCCTGGACCTGCAGATCGCACTGGACTCGCACTCCGCCATGGCCAGCCTGCACCACCAGCGGCCAGGGCAAGCGCCGGCCAGGACCCCCCTGACGGCTCTCAACACAGACATCAGCATCCTCTCCTTACAGTCGGCTGAATTCCCAACAGAGTTAATGACAGATGACCGCAAGACGCTCTTTCGCTGAACTGGTGTTTGATTTAAACCCAAAAACACGGGACctgggaactttttttttttttttttttttctctccacccccccaaccaccccccaccccccctttccCCGGTCTggatttttcaattaaatcaagaaaGAGACTTTGCTCAAAGGATGATTGCATTGTTGTATCAGCTCGGACATTCATAGTTATTTATCAAtagactttttcttttttcttttgtcttgtCCTTTCTTCAAACGGAAGGCTCGTTATAATATTCCCAAGAGTGGGAGCTGAAAGGAAAGAGGATCATCGCAAGGAATCGCCCATCAGAAGTCTTTGCCTTTTTTTGCAAAGGTGGAGCGTGAATAGAAGACAACTGGGTTAGTTGCTTTATAAAGTTTAGTCTGTCTTGTCAGAATGGTTACTTTTTTGGCACGTTAAGGACTGGACGTcgtgaaaaactaaaaacctaaaaaaaaaaaaaaaaaacccctaaaaaaaaaacaaaaaaaaaaaaacgtttgcGTGAAACCTTGTGAACTCTGTAATTGGAGTTGATCTTGTATAGTTGCAGAGATTGTACATTTCTGCAGACGATGTAATGCTGTACTTAATTATGCTGAAACTTTTTATAAAAGTAATATTGTAAATTGTAccttttttatacaaaataaatcaaatgctttatttgaatgtgtctcCCCTTAGCTTTGGTACCTTTTCTCTGTGGATGGATTCACACCCAGGATATGATCGCATGACTAGCCACATTTGTTGATggtttttttaaattcctgtaAGAGTGTACTGTGTTAAACtagtttgtttcattgtttgtttcaattgtgTAAATGTCTCTCTTAATATATGCCATACACGCACGAAACGCCCAATCACTTCTAACATGTGAAATATACAAAGTGACAATGTTTATGGAGATCTATTGCTGTCTGGAAACTGTTCTATGTAATAAACCTACATCTCAGTGGGTACTGCTAGAGTAAATTATGCCTCAGGATTTGTAGCATCTGACCCCCTTATCTCCCAGAACAAAAATGTAGTTAAAGTATACCTCAAAAGGGTGCATCTATATTTCCTAAACCAGTGCAAAGGTAtttcctggggggggggggggtgaatagttctTGAACCCTGAGCACATTTTCCCCGTTGGTTTATTACAATGAAATGGTCTTGTGCTCCAATTGTTAATTCAGCACTATAAAGTCGAGCAGGTGATCATAATAAAACCCATTCCCACTTAACTCCTTTCGATGGTTCTGGTATACTTGCGTAAGGATGCCGATAATGAAACTGGGCGCCAGCAATAGTTGCGTCGCACGTCGCATTCACGCAATCCTGCGCCATCCGGGCTGCAGCGCAGATGTGCccagttctgcgcggctccaccaatgggctCGATGCGGCCGCGCAGATCTGCGTCCATCTGCGCTGCAAGGACGCCAGCGGGGTGCCATTCCCTGCCCTTGCCACGGCTGGCTTTATCCGCAGGGAGAGCTCTCTGGTCCTCTACCATCAACCTCACCCCCACAAACTGCACCAAACAAACCGGCACTGGCAACTACTGGAAAACCCAGTGGAAACCCCAAACCATCCAGCCATGCCTGTGGCTCTTATCCAATGCGtcttcagtttcagtttatGTTAAAGGTCCCTTTGTGCAAAACTAGTCCTTCTCAGGTTtggaccaaaacaaaatgtaaacccaACAAGATGATAAAGTGAGGTCTGAAATCTTGCGTTCAGCAGCCCATAACCGCTCATCTGTAGCATTTGGAGGGACGGATAAAACGCAGGGTGAATGGCGCCCCCTAACTAACCCACACACAGTTGTGCTGTACATGAGCCAGAccaataaaaaagaacaaacatcatgtattcatttattttgtatttaactgGATTCCCCTAATTCAAATCAGTCAAACTCTTTAAAACAGTTGATAAAAACCCATGTGTGTCAATGAGAAGTCAATAACATTCATATCACTGATTAACTGGCATTGCTTCACGTTGTTTTAATACCTATTTAGATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1531 lncRNA upstream 205101 8443740 ~ 8444024 (+) True G1303
TU1519 lncRNA upstream 308533 8340266 ~ 8340592 (+) True G1291
TU1499 lncRNA upstream 372142 8275762 ~ 8276983 (+) True G1271
TU1479 lncRNA upstream 852271 7796451 ~ 7796854 (+) True G1253
TU1466 lncRNA upstream 898660 7523861 ~ 7750465 (+) True G1241
TU1573 lncRNA downstream 8628 8661032 ~ 8666927 (+) True G1343
TU1577 lncRNA downstream 47062 8699466 ~ 8700554 (+) True G1347
TU1613 lncRNA downstream 191423 8843827 ~ 8844082 (+) True G1375
TU1625 lncRNA downstream 287747 8940151 ~ 8941751 (+) False AMCG00003541
TU1675 lncRNA downstream 356893 9009297 ~ 9022573 (+) True G1430
AMCG00003533 mRNA upstream 311475 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003532 mRNA upstream 356907 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003530 mRNA upstream 668928 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003526 mRNA upstream 1101571 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003525 mRNA upstream 1118000 7518051 ~ 7531125 (+) True AMCG00003525
AMCG00003535 mRNA downstream 167008 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003541 mRNA downstream 248052 8900456 ~ 8941678 (+) True AMCG00003541
AMCG00003542 mRNA downstream 305737 8958141 ~ 8959534 (+) True AMCG00003542
AMCG00003539 mRNA downstream 313307 8965711 ~ 8977843 (+) True AMCG00003539
AMCG00003540 mRNA downstream 327196 8979600 ~ 8982021 (+) True AMCG00003540
TU1202 other upstream 2154220 6487692 ~ 6494905 (+) True G1012
TU1763 other downstream 603424 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 1125104 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2837781 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2921327 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 4385033 13037437 ~ 13042597 (+) True AMCG00003648

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023066 True 1524 mRNA 0.41 3 NC_007128.7 34805920 ~ 34808165 (+)