RNA id: AMCG00003535


Basic Information

Item Value
RNA id AMCG00003535
length 1365
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00003535
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8819412 ~ 8842419 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCAATGCGTGGTCCAGGGCTGCCCAAACAAATCCTACCCCAAAGCCGGGTTTGCAAACCGGCCTCGAAAGCGTTTCTTTAGCTTTCCCAAGGAGCAGGCCCGCGTTAAAGTATGGCTGGCCGCGCTGAGAGAAACGGAGCGAGTGCTGTCCGACCACCACCGGATCTGCGAGGACCACTTTCTGAAGCACCACATCACTCCGTTTGGAGTAACTAAAGACGCGATCCCCATCATGCCCCTGTATCTGGACGGGCCCCTGTCCTCCAGTGCTGGAGCCGACTTCGACGAGGCAGACGAATTATCTGCTGAGGCGGAAATGGAGCACGAGGAGAGCTTCGACAAAGATGCAGAGGATTTCTCATTAAACTGGGAAGCCGAGCAACCTGAGGCCTCTGCAGAGGAGATCCTGGAGCACAGCAGTGCTCCTGTGCAGAAACTGGGCAGTCCCAGACACACGGGCGAGCAGCAGCATTTCAATCCGCGGCGGGGGGCGGATTTGGGATCCGCATCTTCAGACCCCATTTCAACCATGGATGATGATTTCCTGGAAAGGAGTTTTGTGGAAAAAGAGTTTGTGCATGCTGCCATTCCCGCCGTCTCCCCGTTCAGCTTACTGAAGATCGTTCTATGCCCTTGGTCTTTTCCAGAAGAAGCCACCAAGCTCCGCTGTGACGTCTCCCTGGTCTACCTCACCAAAAAGTTCATGGAGCTCATTCAGGTGGCTCCAGATGGCATTCTGGACCTGAACAATGTAGCACGGACATTAGGAGTGCGCAAGAGAAGAGTCTACGATATCACCAATGTTCTGGATGGCATTCAGCTGATTCAAAAGCGCAGCAAGAACCAAATTCAATGGGTTGGATCAAACCTGAACTTTTTGACTCAAGTGGACACAAAGCAGCAGAAGCTGAAAGATGAACTGCTGGATTTAACAGCAATGGAAGAAGCCTTGGACGAGTTAATCAAAGACTGTGCTCACCAGCTGTTTGAATTAACCGACCAccaagaaaatgcaaaatatccTTTTATCTCGCAGCATTTGGATACTTCAGCCTATGTGACTCACAGGGATATCCGCAAGATCCAGGCCTTCCAGGAGCAGACGGTTTTTGCCATCAAAGCTCCAGAGGAAACCAAGCTGGAGGTTCCTGTGCCTAAGGAGGACAGTATTCAGATCCACCTGAAGGGATCCAAGGGGCCCATCACCGTGCTGCTGTGCTCAACCAACAGCCTAGCGGACTCTGACCAGGGGGCTGAAGATGGAGGGTCTTTCTCTACTCTGGAGAGCAGCTGCATATATACTGAGCCACTGCATACAGTCACCCGCCAgCTCAGGGGGATTCACATTCAGCTTCGGTAG

Function

GO: NA

KEGG:

id description
K09390 E2F6; transcription factor E2F6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1577 lncRNA upstream 118858 8699466 ~ 8700554 (+) True G1347
TU1573 lncRNA upstream 152485 8661032 ~ 8666927 (+) True G1343
TU1531 lncRNA upstream 375388 8443740 ~ 8444024 (+) True G1303
TU1519 lncRNA upstream 478820 8340266 ~ 8340592 (+) True G1291
TU1499 lncRNA upstream 542429 8275762 ~ 8276983 (+) True G1271
TU1613 lncRNA downstream 1408 8843827 ~ 8844082 (+) True G1375
TU1625 lncRNA downstream 97732 8940151 ~ 8941751 (+) False AMCG00003541
TU1675 lncRNA downstream 166878 9009297 ~ 9022573 (+) True G1430
TU1676 lncRNA downstream 166878 9009297 ~ 9027632 (+) False G1430
TU1677 lncRNA downstream 166878 9009297 ~ 9020218 (+) False G1430
AMCG00003534 mRNA upstream 166942 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003533 mRNA upstream 481762 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003532 mRNA upstream 527194 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003530 mRNA upstream 839215 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003526 mRNA upstream 1271858 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003541 mRNA downstream 58037 8900456 ~ 8941678 (+) True AMCG00003541
AMCG00003542 mRNA downstream 115722 8958141 ~ 8959534 (+) True AMCG00003542
AMCG00003539 mRNA downstream 123292 8965711 ~ 8977843 (+) True AMCG00003539
AMCG00003540 mRNA downstream 137181 8979600 ~ 8982021 (+) True AMCG00003540
AMCG00003544 mRNA downstream 233471 9075890 ~ 9106765 (+) True AMCG00003544
TU1569 other upstream 167008 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 2324507 6487692 ~ 6494905 (+) True G1012
TU1763 other downstream 413409 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 935089 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2647766 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2731312 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 4195018 13037437 ~ 13042597 (+) True AMCG00003648

Expression Profile