RNA id: AMCG00004317


Basic Information

Item Value
RNA id AMCG00004317
length 1741
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00004317
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42679324 ~ 42687565 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCACAGGGGATATTGACAGCTGagcattttaaatcaacacaaGCCCAGGAGCTGCCTGAGCCATGGCGGGACGCGGGCTGCCGCTGTGCCTGTGGTTGCTGCAGCTGTGTGCCGGCGGGCGGGTCTCAGCAGCGCCGCTGGACGGCCGCCAGGCCGCCGGGGCCCCAGGTCGATTTTGGCATGTGTCAGATTTGCATTTGGATCCGACTTACCACATAACCGATGACCACACCAAGGTTTGTTTCTCATCTAAGGGTTTCCCGGCCCAGAACCCCGGCATATTTGGGGACTACATGTGTGATTCCCCTTATCAGCTCATTCAGTCAGCCTTTCAGTACATGCAACAAGTGGAGCAGCAGCCAGACTTTATGATTTGGACTGGGGACAGTCCCCCACATGTCCCAGCCAAGGAGCTCTCCACTGAGACCGTGATAAACATCATCAGCAACATGACCCACACCATCCAGGGGCACTTCCCCCATCTCCCAGTCTATCCTGCCCTTGGGAACCATGACTATTGGCCACAGGATCAACTGCCAGTATCGACTAATAAAATTTATGAAGCTGTTTCTGAACTGTGGAAGCCTTGGCTGAAACCAGAAGCCCTTAAAACTCTAAGAACAGGTGGTTTCTATTCACAGATAGTTGAGCCGAATTTGAGGTTGATTAGCCTCAACACTATTCTGTACTACAGCCCCAATAATGAGACGCTCAACATGACTGACCCAGCTGGACAGTTTGAGTGGCTGGAGGAAACTTTAGTAACATCTCGGCAAAGTAATGAAAAGGTTTATGTCATTGCACACGTCCCAGTGGGTTACCTGCCCTTTGCCAGGGGTATCACAGCGGTCAGAGAGCACTTCAATGAAAGGCTCGTGGGAATTTTCCGCGAGTTCAGCGACGTTATTGCTGGCCAGTTCTAcggtcacacacacagagacagcatCATGGTGCTCCTGGATCAGCAAGGCCAGGCTGTTAGTTCACTGTTTGTGACACCAGCTGTGACCCCAATCAAAGGAAGCTCCGAGAGCGACTCCAACAACCCGGGCTTTCGTTTCTACCAGTACAGTTCCCAGGATTTCAGATTGCTGGACATTTGGCAGTACTACTTGAATCTTACAGAAgccaatgagggaaaaaaatctgattgGAAACTTGAATACAAAATGACTGAGGCTTTTAACATACCAGATATTCAGCCAAAAAGCTTGCACGAACTTGCTCTGCGGTTTGAAAAGCCACAGAGTAAGGCCTTTCAgaagtattataataattttttgGTGAGTTATGATAACACACTTGTGTGTGAAGGAATGTGTAAAGTGAGTCAGGTTTGTGCCATACAGTTCTTAGACCATGATAGTTACTCCATGTGTACCAAGAAGAAATCTCAAGAAGTACACAACAGTTTTCATacttgatttacatttttttttatgcaatgtattttttaaaagcagttcaATACAAGATGACATGTATGAGAGAGCTTCATTCAGtctgtattttaaagcagtttttacAGTTTGCCATGATTGTGggtccaaaataaaatatgtgtaaCAGACAAATGTCAGGCCTAGCTTAGCttccaaaaaaacataaaacaaataaaccaaaaactatatatatacattgatataTTGCACAATTATATGTATGTGATTCTATGCAAGTGTATTGTTGCAATTTTGCATACAAAACATAATTGATAACCTtgtcatattttcaaaaatg

Function

GO:

id name namespace
GO:0006685 sphingomyelin catabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0004767 sphingomyelin phosphodiesterase activity molecular_function

KEGG:

id description
K01128 SMPDL3; sphingomyelin phosphodiesterase acid-like 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8916 lncRNA downstream 366206 42312919 ~ 42313118 (-) True G7270
TU8914 lncRNA downstream 414347 42264690 ~ 42264977 (-) True G7268
TU8905 lncRNA downstream 459140 42219958 ~ 42220184 (-) True G7259
TU8884 lncRNA downstream 589697 42087804 ~ 42089627 (-) True G7243
TU8863 lncRNA downstream 611660 42066598 ~ 42067664 (-) True AMCG00004302
TU9007 lncRNA upstream 5189 42692754 ~ 42719691 (-) True G7335
TU9010 lncRNA upstream 38347 42725912 ~ 42737850 (-) True G7336
TU9118 lncRNA upstream 548253 43235818 ~ 43237610 (-) True G7419
TU9175 lncRNA upstream 715388 43402953 ~ 43428586 (-) True AMCG00004336
TU9174 lncRNA upstream 732286 43419851 ~ 43428586 (-) False AMCG00004336
AMCG00004316 mRNA downstream 18717 42640409 ~ 42660607 (-) True AMCG00004316
AMCG00004313 mRNA downstream 148318 42377798 ~ 42531006 (-) False AMCG00004313
AMCG00004312 mRNA downstream 312389 42364767 ~ 42366935 (-) True AMCG00004312
AMCG00004311 mRNA downstream 317336 42355551 ~ 42361988 (-) True AMCG00004311
AMCG00004310 mRNA downstream 342712 42333224 ~ 42336612 (-) True AMCG00004310
AMCG00004320 mRNA upstream 1483 42689048 ~ 42691079 (-) True AMCG00004320
AMCG00004319 mRNA upstream 50938 42738503 ~ 42752817 (-) True AMCG00004319
AMCG00004323 mRNA upstream 213470 42901035 ~ 42901883 (-) True AMCG00004323
AMCG00004324 mRNA upstream 226577 42914142 ~ 42920194 (-) True AMCG00004324
AMCG00004322 mRNA upstream 235111 42922676 ~ 42925799 (-) True AMCG00004322
TU8946 other downstream 299918 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 2830201 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 5310502 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 7264878 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 7715485 34960960 ~ 34963839 (-) False AMCG00004132
TU9361 other upstream 1833349 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 3619361 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 3780560 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 4197070 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 4372331 47059896 ~ 47306589 (-) False AMCG00004403

Expression Profile