RNA id: TU125


Basic Information

Item Value
RNA id TU125
length 828
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G103
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 519101 ~ 558734 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGACAATGAATTTTACATAATTCataggggacaaaactgagccaggaaattacagaccaatcagtctcacctgcatcacctgtaaaatgttggaaaaaatgattagacagaaaatagaggagcatctgaatgaaaaccatattcttggagatagtcaacatttagacgaggcagatcatgtattactaatttattaaacatttttgaacatgcaactgcagctgtagatcacgtgaaagcatatgatatgatatacttagatttccaaaaagcttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaATGGGTAGGGTTATTgcatgtaagtagatggattatgaactggttgatgtataggaagtagagggtgtcgattagaggagttgcttctaactggagtgaggttgttagtggagttccacagggatcagtactagggcctttgctttttctaatctatattaatgatctggactctgggatagttagcaaacttgtcaaatttgcagatgatactaaataggtggctcagcagatacaatcttggcagcacaggctattcaaagagacttagataatattcagttgtgggccgacacaaaaatgtccactataatgaaactatgggaggtacagatctagatgaagtaacgcatgagaaagacctaggagtctgtggactcctcactttctccatccaagcaatgtggggaagcaataaaaaaggcaaaccgaatgctagggtatactgtcaaatgtgtagaatttagaacaagggaactgaaccttttcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109 lncRNA downstream 33201 485584 ~ 485900 (-) True G89
TU135 lncRNA upstream 55457 614191 ~ 615637 (-) False G112
TU137 lncRNA upstream 55736 614470 ~ 615637 (-) False G112
TU136 lncRNA upstream 55835 614569 ~ 616320 (-) True G112
TU150 lncRNA upstream 176032 734766 ~ 769986 (-) True G122
TU205 lncRNA upstream 386504 945238 ~ 957196 (-) True AMCG00003400
AMCG00003390 mRNA downstream 278588 232621 ~ 240513 (-) True AMCG00003390
AMCG00003389 mRNA downstream 441593 62457 ~ 77508 (-) True AMCG00003389
AMCG00003392 mRNA upstream 35541 594275 ~ 597178 (-) True AMCG00003392
AMCG00003393 mRNA upstream 60832 619566 ~ 627690 (-) True AMCG00003393
AMCG00003394 mRNA upstream 101794 660528 ~ 664276 (-) True AMCG00003394
AMCG00003399 mRNA upstream 112627 671361 ~ 802713 (-) True AMCG00003399
AMCG00003401 mRNA upstream 360578 919312 ~ 930578 (-) True AMCG00003401
TU425 other upstream 1838908 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1838908 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1878993 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2835923 3394657 ~ 3430272 (-) True G531
TU920 other upstream 4092037 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile