RNA id: TU109


Basic Information

Item Value
RNA id TU109
length 317
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G89
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 485584 ~ 485900 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttggggtagcattatatgtgaaaaatgacattgaggcagaataactcatattagatcccagtaatggaacagaatctttgtgggtgaaacttttggacaagagatgtggaggattagtggtaggagtgtgttacagactacccaactcagatattcagcaacatgttgcattgtacagtgtaatcaggactgcatgtagcaaggatgtggctgttataatgggggatttcaatttcccaaacataaaCTGGGAAAGCTCATCTGGGACTACAgcagcagaaatagaaatggttgagatggtaaatgactgctttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125 lncRNA upstream 33201 519101 ~ 558734 (-) True G103
TU135 lncRNA upstream 128291 614191 ~ 615637 (-) False G112
TU137 lncRNA upstream 128570 614470 ~ 615637 (-) False G112
TU136 lncRNA upstream 128669 614569 ~ 616320 (-) True G112
TU150 lncRNA upstream 248866 734766 ~ 769986 (-) True G122
AMCG00003390 mRNA downstream 245071 232621 ~ 240513 (-) True AMCG00003390
AMCG00003389 mRNA downstream 408076 62457 ~ 77508 (-) True AMCG00003389
AMCG00003391 mRNA upstream 52894 538794 ~ 539741 (-) True AMCG00003391
AMCG00003392 mRNA upstream 108375 594275 ~ 597178 (-) True AMCG00003392
AMCG00003393 mRNA upstream 133666 619566 ~ 627690 (-) True AMCG00003393
AMCG00003394 mRNA upstream 174628 660528 ~ 664276 (-) True AMCG00003394
AMCG00003399 mRNA upstream 185461 671361 ~ 802713 (-) True AMCG00003399
TU425 other upstream 1911742 2397642 ~ 2401895 (-) False AMCG00003423
TU426 other upstream 1911742 2397642 ~ 2401895 (-) True AMCG00003423
TU462 other upstream 1951827 2437727 ~ 2438821 (-) False AMCG00003422
TU643 other upstream 2908757 3394657 ~ 3430272 (-) True G531
TU920 other upstream 4164871 4650771 ~ 4661367 (-) False AMCG00003476

Expression Profile