RNA id: TU1468


Basic Information

Item Value
RNA id TU1468
length 548
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1242
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7526859 ~ 7528458 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTTCAGATCGTCCtgcaaataaaatcactttgGTCTGGATATCAAGTCACACATTGCCGGGCCAGATCATCACCCTGATGCTCTCCAGCTGAGCTACTCCGGCAACGGTGCATTAATGCGGAAGAGCTATTAACTGTGCACTGTTTCTGCTGTCACTCATCTCATGCAATGGTGTGTTTATCTGAGCGCTGTGACGCGCTGTACCAGGAACTACATGTTTCTAAATCTCATCTTGTGTGGggtttcattgtttctgtagaCGATTACACTAAACGCTGAAGTATATCTGTCAGCCAATAAGTGCACTGGACACCGCCCACTGGCTGTGATTGACAGAGCGGGTTTGTATGACGTAATTCACTGGTAAAATGATCGAACGCAGAAATACACCGTGTTCGTGCAAAAATGAATTTTCTACacttgtggtttttattttacactacaggaataaataactaaacaaatgttgaaattCGAGGGTTCGAACACCGGCAGTGTGTTACTTGATATCCAAaccaaagtgtttttatttgcaggACGATCTG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445 lncRNA upstream 28515 7498067 ~ 7498344 (+) False AMCG00003524
TU1436 lncRNA upstream 36978 7489445 ~ 7489881 (+) True G1218
TU1403 lncRNA upstream 161382 7364944 ~ 7365477 (+) True G1187
TU1358 lncRNA upstream 453250 7073404 ~ 7073609 (+) True G1146
TU1177 lncRNA upstream 1540465 5986038 ~ 5986394 (+) True G990
TU1479 lncRNA downstream 267993 7796451 ~ 7796854 (+) True G1253
TU1499 lncRNA downstream 747304 8275762 ~ 8276983 (+) True G1271
TU1519 lncRNA downstream 811808 8340266 ~ 8340592 (+) True G1291
TU1531 lncRNA downstream 915282 8443740 ~ 8444024 (+) True G1303
TU1573 lncRNA downstream 1132574 8661032 ~ 8666927 (+) True G1343
AMCG00003521 mRNA upstream 12449 7505463 ~ 7514410 (+) True AMCG00003521
AMCG00003524 mRNA upstream 22844 7498040 ~ 7504015 (+) True AMCG00003524
AMCG00003527 mRNA upstream 44653 7466921 ~ 7482206 (+) True AMCG00003527
AMCG00003529 mRNA upstream 67383 7453411 ~ 7459476 (+) True AMCG00003529
AMCG00003522 mRNA upstream 88412 7422803 ~ 7438447 (+) True AMCG00003522
AMCG00003526 mRNA downstream 4095 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003530 mRNA downstream 450317 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003532 mRNA downstream 756369 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003533 mRNA downstream 788580 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003534 mRNA downstream 1120699 8649157 ~ 8652470 (+) False AMCG00003534
TU1202 other upstream 1031954 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 1120667 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 1727370 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 2249050 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 3961727 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 4045273 11573731 ~ 11577329 (+) True G1989

Expression Profile