RNA id: TU1577


Basic Information

Item Value
RNA id TU1577
length 204
lncRNA type inter_gene
GC content 0.62
exon number 2
gene id G1347
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8699466 ~ 8700554 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATCTGAGCAGTTCACTTTGGCACCATACTGAAGTAAGAGATGCACAATCTCTGCATGTCCTCTCCCAGCTGCCCAGATAATTGGATAAACACTGTATTGCACCTGGCCAGTGATGTTGGGGTTTGCACCTTTGGCAAGCAGCATGTTTGCCACCTCTGTTTGACCTTTATATGCCGCCCACATGAGGGCAGTCCATCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1573 lncRNA upstream 32539 8661032 ~ 8666927 (+) True G1343
TU1531 lncRNA upstream 255442 8443740 ~ 8444024 (+) True G1303
TU1519 lncRNA upstream 358874 8340266 ~ 8340592 (+) True G1291
TU1499 lncRNA upstream 422483 8275762 ~ 8276983 (+) True G1271
TU1479 lncRNA upstream 902612 7796451 ~ 7796854 (+) True G1253
TU1613 lncRNA downstream 143273 8843827 ~ 8844082 (+) True G1375
TU1625 lncRNA downstream 239597 8940151 ~ 8941751 (+) False AMCG00003541
TU1675 lncRNA downstream 308743 9009297 ~ 9022573 (+) True G1430
TU1676 lncRNA downstream 308743 9009297 ~ 9027632 (+) False G1430
TU1677 lncRNA downstream 308743 9009297 ~ 9020218 (+) False G1430
AMCG00003534 mRNA upstream 46996 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003533 mRNA upstream 361816 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003532 mRNA upstream 407248 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003530 mRNA upstream 719269 7978775 ~ 7980197 (+) True AMCG00003530
AMCG00003526 mRNA upstream 1151912 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003535 mRNA downstream 118858 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003541 mRNA downstream 199902 8900456 ~ 8941678 (+) True AMCG00003541
AMCG00003542 mRNA downstream 257587 8958141 ~ 8959534 (+) True AMCG00003542
AMCG00003539 mRNA downstream 265157 8965711 ~ 8977843 (+) True AMCG00003539
AMCG00003540 mRNA downstream 279046 8979600 ~ 8982021 (+) True AMCG00003540
TU1569 other upstream 47062 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 2204561 6487692 ~ 6494905 (+) True G1012
TU1763 other downstream 555274 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 1076954 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 2789631 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 2873177 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 4336883 13037437 ~ 13042597 (+) True AMCG00003648

Expression Profile