RNA id: AMCG00006148



Basic Information


Item Value
RNA id AMCG00006148
length 576
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00006148
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16691581 ~ 16696873 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACGAAACAAGACTGTACTGCTGACAAGAGCAAGTTTGTTGCCACAGTGAAGGACTGGTTATGCCTCCCCAGTGGCAATGAACAGGCTCTGGAAGATGCTCTAGTCACCATTGGCCCTGTCGCAATCACCATTGATGACACAACCTGCAAATTCCAGTTCTACCAGAATGGAGTCTTCTATGACCCCAAGTGTACCAATTGGGAACAGAATCACGCTGTGGTCTTGGTTGGATTTGGTACTGCAGGAACTGACAATTACTGGATCATCAAGAACAGGCCGCCACAGAGGCAGTTCTTGATCCAGCGCTGCTCCCACTGTTTCACGGCTGTGGTCTTGTTGGGCGATCGCAGCATGATAATGCCATCATTGACGGGCAGCCAATCCATTGCGGGCACCAGCAGCTGGCTCGGCAGTAAGCAGCACTCGTCAATCAAGGGCTCATCGGGCTCCTGGGGGTGGCTCTCATCGCGACCTGCAAAGGAGAGCAAACTCTGTCAGAGAGCGACAGAAAAGAGTTACACGCTCAAGGTCTGTAAAGAAAAGGAGCCGTACAGCAGAGCCAGAGCTTGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU196904 lncRNA upstream 46732 16644447 ~ 16644849 (+) True G156329
TU196901 lncRNA upstream 63868 16625558 ~ 16627713 (+) True G156326
TU196896 lncRNA upstream 91723 16599532 ~ 16599858 (+) True G156321
TU196875 lncRNA upstream 186375 16504770 ~ 16505206 (+) True G156302
TU196847 lncRNA upstream 223905 16464008 ~ 16467676 (+) True G156279
TU197030 lncRNA downstream 462704 17159577 ~ 17171780 (+) True G156430
TU197041 lncRNA downstream 635663 17332536 ~ 17342156 (+) True G156440
TU197127 lncRNA downstream 826361 17523234 ~ 17524750 (+) True G156506
TU197131 lncRNA downstream 838758 17535631 ~ 17547361 (+) True G156509
TU197144 lncRNA downstream 870686 17567559 ~ 17571532 (+) True G156521
AMCG00006141 mRNA upstream 11029 16674786 ~ 16680552 (+) True AMCG00006141
AMCG00006089 mRNA upstream 546343 16123128 ~ 16145238 (+) True AMCG00006089
AMCG00006088 mRNA upstream 570678 16104381 ~ 16120903 (+) True AMCG00006088
AMCG00006113 mRNA upstream 624683 16054075 ~ 16066898 (+) True AMCG00006113
AMCG00006112 mRNA upstream 641757 16047776 ~ 16049824 (+) True AMCG00006112
AMCG00006142 mRNA downstream 10735 16707608 ~ 16722360 (+) True AMCG00006142
AMCG00006143 mRNA downstream 26419 16723292 ~ 16731231 (+) True AMCG00006143
AMCG00006125 mRNA downstream 211643 16908516 ~ 16917980 (+) True AMCG00006125
AMCG00006130 mRNA downstream 373167 17070040 ~ 17076264 (+) True AMCG00006130
AMCG00006151 mRNA downstream 398809 17095682 ~ 17101861 (+) True AMCG00006151
TU196902 other upstream 62399 16627793 ~ 16629182 (+) True G156327
TU196796 other upstream 546958 16140544 ~ 16144623 (+) False AMCG00006089
TU196781 other upstream 631751 16054035 ~ 16059830 (+) False AMCG00006113
TU196746 other upstream 718575 15964433 ~ 15973006 (+) False AMCG00006107
TU196591 other upstream 1106820 15578084 ~ 15584761 (+) True AMCG00006065
TU197026 other downstream 426332 17123205 ~ 17127554 (+) False AMCG00006149
TU197282 other downstream 1276868 17973741 ~ 17980637 (+) False G156640
TU197332 other downstream 1493351 18190224 ~ 18356589 (+) True AMCG00006138
TU197362 other downstream 1781255 18478128 ~ 18480087 (+) True AMCG00006174

Expression Profile