AMCG00006142 (tmem259)


Basic Information

Item Value
gene id AMCG00006142
gene name tmem259
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16707608 ~ 16722360 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006142
CTCCCCCCCGCGACTCCACCTGTTTTCTCTTGCACTGTGTGTTGTTCGTGGTGGAGAGAAGAGCCTGGAGAAAATGGCAGCAGCAACAGGGCAGGAAAAACAACGAACAGAAATGAGAAATCCCGAGCAGTGACAAACCTGGACAGAAGTCCGACTTCTGGAGAAACTACAGTAGTCAGTGGTCCAAAGTGCTGGGGATTACCTTCCTAAATAACACTTACGGTGTCGCCTAGAGCTTCCGATCACAGGACGGTtctactgaaaaaaaatatatatatagatatctaaatatagcaaaataaaaaggaaatagtTAGATCAGGACGACCTTcgcattattttttttgtcttaattggATTTGCACATTTTGCGGGCCAATCCAGAAGTTGTGTATCTTGATTCAGGGCAGGATGTGGACGAGTGATCATTCCCTAGGCCACAACAAGTTCGTGTAGTGCTGGGGAATTGAGAGCGAtcctatttttccttttttaaataattatcagTCGTCCACATTATAGTGATTTGATTCAGTTCGGTTACTTGAGAAATAATGTCAGAACAAGGATCGAGAAGTTAAAACCCCCATTGAAATACGGGTTTTTATAACAGCCCGAGTACTTGCAAATATACGTTTTTAACAGCACACCACAAAGACGAGCTGTGCCggtttgtttgtgcattttgCCTTCATTCGACGTGAGCATTTTTTCCGCACTGTGAAGATGTCGGAAAACCAGGTCAACGTCAATAACAACAACCCTATAAATAACCCCGGGGCCAACCGCATCAGGAACCCAAATATCAACCAGAACCCGCTGATTAATGTGCGGGACCGGCTGTTTCACGCCCTCTTCTTTAAGATGGCAGTGACCTACGCCAGACTCTTCCCCCCGTCTTTCCGGAGAATCTTCGAGTTCTTCGTCCTGCTAAAGGCCTTGTTTGTGCTCTTCATCCTGGCTTACATTCACATCGCCTTCTCACGGTCACCAATCAACTGCCTGGAACACGTGCGGGAGAAGTGGCCACGCGACGGCATCCTGCGCGTGGAGATCCAGAGAAACTCCAGCCGGGCGCCTATCTTCTTGCAGTTCTATGAGACGGACAGCTTCCAGGGGCTGGTGAAGGAGCCCGAGGGGGCACTGGGCActgtggaagaggaggaggaggagatgaccCTGGACATGTTTGACAACAGCTCAGTCGAGTTTAAATTGGAAATCGAGCCCCGGCTGAAGCCCTCTctgagcagcagtgtggaggcGGTGACGCAGGCGGGGGGGCTCAACGAGAGCCAGGACCTGTCCTTCAGCCAGGCGCCGACTAAAGGTATGCAGCCGCTGAGGGAGACAGTCTCCGAGATTGAGATGCTAACCCGAGCAGTGTGGCCCCAGGAGGAATATATTGTGGAGTATTCATTAGAGTATGGCTTTCTGCGCCTCTCCCAGACCACTCGCCAGCGGCTCAACATACCCGTCATGGTGGTCACTCTGGACCCCATGAAGGACCAGTGCTTTGGGGATGGCTTTAGTCGATTCCTGCTGGACGAGTTTCTGGGCTATGACGACATCTTGATGTCCAGCGTGAAAGCACTGGCAGAGAACGAGGAGAACAAAGGATTTCTGCGGAACGTCGTCTCTGGAGAACACTACCGCTTTGTCAGTATGTGGATGGCACGCACCTCCTACCTGGCGGCCTTTGTTATCATGGTTATTTTTACCCTGTCCGTCTCCATGCTACTGCGCTACTCCCATCATCAGATATTTGTCTTCATAGTTGACCTGCTTCAGATGTTGGAGATGAATATGACAATCGCCTTCCCTGCTGCACCTTTGCTCACAGTTATACTGGCTTTAGTTGgCATGGAGGCTATTATGTCTGAATTTTTCAATGACACAACAACTGCATTCTACATCATCCTCATCGTGTGGCTGGCTGACCAGTACGATGCCATCTGCTGCCACACCAATACCAGCAAACGGCACTGGCTCAGGTTCTTCTATTTGTACCATTTTGCATTCTATGCATACCACTACCGTTTCAATGGACAGTACAGCAGCTTGGCTTTGGTGACATCCTGGCTGTTCATACAGCAGATCCGCATCCAAGAGATGTTGCTGCAGAACCAGCAGGCAGGCCAGGGCAACCAGACCACCCTGCAGGACAACCTGAACAACAACACCACCAGCAGTGGAGCACCAGCTGGGGCTGGAGGAGCAGGAGGTGGTGCCGCCAGAGTAGCCCCCAATGGCCAGCTGCGCTCCCCTGGCAACGCCCAACCTCATGCCAACGGCTCGGCCAATCAGAGTGTGTTAGGGGTGGATGTCGGGAATGGGGACCTAGACTGGGTGGCGGAGACGGCTGCCATCATCACAGAGGCACTGTCCTCCCCACAGCTGGGGGGGTCCCTGCTGGAGACTGAGGGCATCCGAGAGCAGCCCCACCCTGAGGCGGGCATCAGCTTGGTGGCACACCTGCGGGTTGGGGGCGAGGGCCCGGAGAACAGTGTCAGCACCAGTGCTAGCATGGTGACGGTGGAGATCACGGCCGGGGGGGGCGACCTGGGAGAGCAGGCCCCCAGCATTGCACAAGACCCCTCGCCTGTGAGCGTCCTGCAGGTGGAGGAGGCCGCACAGCCTGTCTTGGCTGCTGTCTCGGGGACTGGAGCCTCTCAGGACTCCTTGGTAGACTGTAGGAGCCCTGTGGGAGGGAGGCCGCCCTCCCTCGTGGAGCCCATGCAGACCACCCAAATGGAATGGGACGTTAAGACAGAAGGCGACTGCACAGCCACCCCTCCTGACCCCCAGCCCACCCCTTCCTGA

Function

symbol description
tmem259 Predicted to be involved in positive regulation of ERAD pathway and response to endoplasmic reticulum stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human TMEM259 (transmembrane protein 259).

NR:

description
PREDICTED: membralin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006142 True 2823 mRNA 0.53 11 16707608 16722360

Neighbor

gene id symbol gene type direction distance location
AMCG00006148 NA coding upstream 10735 16691581 ~ 16696873 (+)
AMCG00006141 NA coding upstream 27056 16674786 ~ 16680552 (+)
AMCG00006088 NA coding upstream 586705 16104381 ~ 16120903 (+)
AMCG00006112 NA coding upstream 657784 16047776 ~ 16049824 (+)
AMCG00006104 klhl26,LOC106613638,LOC106573902 coding upstream 750508 15947208 ~ 15957100 (+)
AMCG00006143 NA coding downstream 932 16723292 ~ 16731231 (+)
AMCG00006125 dapk3 coding downstream 186156 16908516 ~ 16917980 (+)
AMCG00006130 NA coding downstream 347680 17070040 ~ 17076264 (+)
AMCG00006151 NA coding downstream 373322 17095682 ~ 17101861 (+)
AMCG00006150 NA coding downstream 381977 17104337 ~ 17121505 (+)
G156329 NA non-coding upstream 62759 16644447 ~ 16644849 (+)
G156326 NA non-coding upstream 79895 16625558 ~ 16627713 (+)
G156321 NA non-coding upstream 107750 16599532 ~ 16599858 (+)
G156302 NA non-coding upstream 202402 16504770 ~ 16505206 (+)
G156279 NA non-coding upstream 239932 16464008 ~ 16467676 (+)
G156430 NA non-coding downstream 437217 17159577 ~ 17171780 (+)
G156440 NA non-coding downstream 610176 17332536 ~ 17342156 (+)
G156506 NA non-coding downstream 800874 17523234 ~ 17524750 (+)
G156509 NA non-coding downstream 813271 17535631 ~ 17547361 (+)
G156521 NA non-coding downstream 845199 17567559 ~ 17571532 (+)
G156327 NA other upstream 78426 16627793 ~ 16629182 (+)
AMCG00006089 NA other upstream 562370 16123128 ~ 16145238 (+)
AMCG00006113 slc35e1,LOC106573890 other upstream 640710 16054035 ~ 16066898 (+)
AMCG00006111 smim7,LOC106573893 other upstream 671639 16032892 ~ 16035969 (+)
AMCG00006107 LOC107709901,LOC107680255 other upstream 718833 15964433 ~ 15988775 (+)
AMCG00006149 NA other downstream 400845 17123205 ~ 17127633 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other downstream 939830 17662190 ~ 17735084 (+)
AMCG00006190 LOC107695212,LOC107676806 other downstream 1023773 17746133 ~ 17764228 (+)
G156640 NA other downstream 1251381 17973741 ~ 17980637 (+)
AMCG00006138 NA other downstream 1467864 18190224 ~ 18356589 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004033 tmem259 coding NC_007122.7 CM002895.2 14071689 ~ 14102158 (-)
grasscarp (Ctenopharyngodon idella) CI01000051_07836858_07853522 TMEM259 coding CI01000051 null 7836825 ~ 7854111 (-)