RNA id: AMCG00006919


Basic Information

Item Value
RNA id AMCG00006919
length 2577
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00006919
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25899551 ~ 25911582 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCCCACAGTAGCGGAAAGGCGCGCTAGACTCTTCGACGCTGGACTCGCATTTCGGGCTCCGCTCAtcgctcctcctcctccgtcatGTGATTGATTTATAGGCAGCCAATCGCCGGGGAGACTCGGGGGCGGAGTCAAAGGTCACTATTAAAGGGGCTCCTAATTTGCATACATCGCGCGAAACTCAAGTGTGGAGGACGGCCAGACCGTGGGCAGCAGTGATGGCATTTATGGGGCAGAGTGACCGGACCATTCAGCAGCTGGATTTCTCCAGCTGTGGGGAAGAGGACAGCAGCGACAGCAGCATGGATGACTGGAGCTGGAGGGAGCACAGCCCTAACAATGgctggaggaggcagaggagggaGAGTTCGATCTGCCGGACTCCCAGGATGTTGCGGGAGCCCCCTCAGGGCACCACCCCATCCCCCTCGACCTCCCACAGCCCCTGTCCTGGGACGCCTCTGCACTACACCACCTGGAGGAAGCTGCGACTCTGCGACACTCCCAGCACCCCTAAAAGCTTATTGTCCAAGGCCAGCCTGCCCAACTCCAATGGGAAGCTGTGTCAAAGTCAGAGGATCCTGAGGTTCACTGGAGGGTCAGATCTCAACAGAGTGCCTTCAGTCAATGTCAATCCCTTTACTCCCGAGACCTTCAGGAAGTCCAGTGAGCAGCAGAAGAGGAAGAACCGGGATTATGATGATGAGGCCAGTGAAATGTACACCACATTCTCGGATGATGATGAAGCCTTTCTACCATCAAAGCGTGCCACAATGCTGGAGAACATGGCTTCTCGCTACGAGTCAGAGTTTCTGGAGCTTGAGCGGATCGGGGCGGGGGAGTTTGGTGCTGTGTTCAAATGTGTCAAGAGGCTAGACGGCTGCCTGTACGCAATCAAGCGCTCAAGGAGGCCGGTGGCTGGCTCTGCAAACGAGCAGCTGGCCCTCAGAGAGGTGTACGCCCACGCTGTCCTCGGCCATCACCCACATGTTGTGCGGGGGAGCCTTCACGATGTCGTTGTGGAGAACGAGGCCCAGGGACGTCTGTTCCAGGAGCCGCAGCTGAAGGAAATACTCTTGCAGGTATCCATGGGTCTGAAATACATCCACAGCTCGGGACTTGTTCATCTGGACATCAAACCCAGTAACATATTCGTGTGCCATCGCCCTGTGTCTAACAGTCAAGCAAACGATGGGGAGAGTGAtgaggaggatgaggagaaCACTTCCACAAGTGTGGTCTATAAAATTGGTGACTTGGGTCATGTGACCTCAGCTACTAGCCCCCAGGTGGAGGAGGGAGACAGCAGATTTCTGGCAAGTGAGGTGCTGCAGGAGGTGAGACCATTTCATTACCGTAGTCGGGACTGCCTCGCCATTGTTAGTCTTTCACAGGATTATTCTCACCTGCCCAAAGCGGATATCTTCGCCCTGGGTCTGACCATCCTGTTGGCAGGTGGCGCAGATCCACTCCCACAGAACGGGGAAGAATGGCACTTTCTCCGCCAAGGCCATCTTCCCACACTCCCCCAGGAGCTCTCGGTACCATTCCACAGCCTGCTCAGCATGCTCCTGGATCCTATTGCCTCTGTACGCCCGTCTGCCTCAGCGCTGTGCAGACACCCAGTCCTGAAGAGGGGCTCTGGGAAATCGGCCGCCCAGCTTCTCAAGGAGCTCAATGTGGAGCGGTTCAGGACCGCTATGTTGGAAAGGGAGCTGAAAGAGGCCCGACTAGCTGCCACTTCACCCCTGCAGGACCTAGACCACTTCCGCCACTTCTCCCGCCAGCCGGGCTCCACAACTCGGCCGGGAGTACGGAGGTTGGTGGGTGGAAAGGCTGTGCGCTCGATGAGCTTTGGCGGCCCGGGACACTGAATGGCCCTTCTGGATGGGTAATATTGGACACCCTGCCATTGACAGGGTTATAGAACACACTTCTGCCCCTGCTCTGAACCATCACAAGGTGGGGAGTTGGAGGAGGGCAACTTGAGAACAGATGGTTCTCATCAGTAGAAGTACTCTGTTGGCGCCTGATAACAGATTGTCAAACGCTACCATAATTACATAGGattcaaagttttatttttattttattttaattttttttgcattaagaATCTTGTTCATTCAATGTTAACATTCACTGTTAAGAAGTATTCAATATTCTGTGGAAAATGTACCTTTGACATCGCAGAAACCCTTCAAAATTGGCtgaggtagaaaaaaaaaaagtgtcaggtCCTCAGCAATGTGGCAAATGGTGTTAAATATGTTATGACTAGAATATCTGATGTTAATTAGACGTAAAGAAACCTTGACACTACGATCTTGCAGTGGTAACCAGGCACTTAAAGCACCTAAAACccacatatataaacaattgtGTAAATACCAGCCCACCGATGCTCTTTGTACTTGGCGAGGAAGTCCAGGTGTAAACTGTACACCAGGTGCATTAGCcacagttttgctttttattttatttttattttttactcaattatagtaaaataattttaatgcaaccaatgtaaataaagttttaaaatattttaatgctgcttgtagtttttc

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0043167 ion binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K06632 WEE1; wee1-like protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142052 lncRNA downstream 32272 25866385 ~ 25867279 (-) True G113431
TU142000 lncRNA downstream 153566 25741068 ~ 25745985 (-) True G113395
TU142003 lncRNA downstream 154061 25741068 ~ 25745490 (-) False G113395
TU141998 lncRNA downstream 160684 25738554 ~ 25738867 (-) True G113393
TU141995 lncRNA downstream 179976 25719362 ~ 25719575 (-) True G113391
TU142099 lncRNA upstream 84059 25995641 ~ 25995929 (-) True G113468
TU142110 lncRNA upstream 89864 26001446 ~ 26038323 (-) True G113479
TU142114 lncRNA upstream 89864 26001446 ~ 26010499 (-) False G113479
TU142233 lncRNA upstream 1147787 27059369 ~ 27059594 (-) True G113573
TU142246 lncRNA upstream 1243953 27155535 ~ 27155857 (-) True G113586
AMCG00006920 mRNA downstream 6471 25888257 ~ 25893080 (-) True AMCG00006920
AMCG00006915 mRNA downstream 52066 25838755 ~ 25847485 (-) True AMCG00006915
AMCG00006914 mRNA downstream 120933 25747136 ~ 25778618 (-) True AMCG00006914
AMCG00006913 mRNA downstream 163670 25725239 ~ 25735881 (-) True AMCG00006913
AMCG00006909 mRNA downstream 227808 25545313 ~ 25671743 (-) True AMCG00006909
AMCG00006918 mRNA upstream 26125 25937707 ~ 25949127 (-) True AMCG00006918
AMCG00006922 mRNA upstream 64908 25976490 ~ 25993105 (-) True AMCG00006922
AMCG00006923 mRNA upstream 181315 26092897 ~ 26105386 (-) True AMCG00006923
AMCG00006925 mRNA upstream 222589 26134171 ~ 26140819 (-) True AMCG00006925
AMCG00006924 mRNA upstream 272669 26184251 ~ 26185762 (-) True AMCG00006924
TU141596 other downstream 2492344 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 4949715 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 5663345 20235856 ~ 20236206 (-) True G112420
TU140642 other downstream 6263626 19633237 ~ 19635925 (-) False AMCG00006774
TU140430 other downstream 7558341 18339270 ~ 18341210 (-) False AMCG00006754
TU142176 other upstream 588433 26500015 ~ 26500681 (-) True G113530
TU142323 other upstream 1491018 27402600 ~ 27527348 (-) True G113645
TU142485 other upstream 2355680 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 2379873 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 2799637 28711219 ~ 28812548 (-) True G113833

Expression Profile