RNA id: AMCG00006935


Basic Information

Item Value
RNA id AMCG00006935
length 882
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00006935
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 27637220 ~ 27649919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACACCCTATGTCCTGTCAGGGATCTCTGGTAGTCTGAACTTTGATGAGGATAGTGATGAGGaagcagaggaagaggaaaacgCCAGATCACATTCTCCACCAGCTGATATCCCCCGGCCAGCCTCTGCTTCCAGCACCAAGTCCAACACAGAGAGAGCAGCCCCTGGGTCCCCCCAGGCCGATGGCCCCTCCATTGAGGTGGACAACCTGGAAGAATTTGCACTGCAACCGGCACCTCGTGGAGTAACTGTTAAATGTCGCATTACCAGGGACAAAAAGGGCATGGACCGGGGGCTTTATCCCACCTACTTCATGCACCTGGAGAAGGATGATAGCAGGAagATACTTAGATGCTCCCTgtCGAACCTTATGGGGACAAAGTTTACTGTCTATGATAATGGAACAAATCCAAGCAAAGCTCAGGGTCTCCTAGAAGAAAGCAAGACACGCCAGGAGCTGGCAGCAATCTGTTATGAGACCAATGTTCTGGGTTTCAAAGGTCCCCGGAAGATGACCGTAATAATTCCAGGGATGAACATGAACTTTGAGAGGGTGCCAGTTCGACCACAAAACgAGCAGGAGAGCTTGTTGACAAAGTGGCAGAACCACTCCTTAGATAATCTTATCGAGCTGCACAACAAGGCACCTGTGTGGAATGACGACACACAGTCATATGTGCTCAATTTCCACGGCAGGGTCACGCAGGCCTCAGTGAAGAACTTCCAGATTGTCCATGATAATGACCCGGACTACATAGTGATGCAGTTTGGACGAGTAGCAGAAGATGTTTTTACTCTGGATTACAACTACCCTATGTGTGCTCTGCAGGCTTTTGCCATTGGGCTGTCAAGTTTTGATGGCAAACTGGCCTGTGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142308 lncRNA downstream 274190 27270459 ~ 27363030 (-) True G113631
TU142247 lncRNA downstream 471822 27165179 ~ 27165398 (-) True G113587
TU142246 lncRNA downstream 481363 27155535 ~ 27155857 (-) True G113586
TU142233 lncRNA downstream 577626 27059369 ~ 27059594 (-) True G113573
TU142110 lncRNA downstream 1598897 26001446 ~ 26038323 (-) True G113479
TU142352 lncRNA upstream 150019 27799938 ~ 27800294 (-) True G113667
TU142359 lncRNA upstream 152571 27802490 ~ 27805153 (-) True G113673
TU142368 lncRNA upstream 206192 27856111 ~ 27856461 (-) True G113681
TU142417 lncRNA upstream 408442 28058361 ~ 28058567 (-) True G113722
TU142418 lncRNA upstream 408800 28058719 ~ 28058931 (-) True G113723
AMCG00006932 mRNA downstream 328050 27308892 ~ 27309170 (-) True AMCG00006932
AMCG00006929 mRNA downstream 997272 26608543 ~ 26639948 (-) True AMCG00006929
AMCG00006926 mRNA downstream 1275769 26192389 ~ 26361451 (-) True AMCG00006926
AMCG00006924 mRNA downstream 1451458 26184251 ~ 26185762 (-) True AMCG00006924
AMCG00006925 mRNA downstream 1496401 26134171 ~ 26140819 (-) True AMCG00006925
AMCG00006934 mRNA upstream 18867 27668786 ~ 27677200 (-) True AMCG00006934
AMCG00006938 mRNA upstream 155564 27805483 ~ 27824074 (-) True AMCG00006938
AMCG00006939 mRNA upstream 315048 27964967 ~ 27970379 (-) True AMCG00006939
AMCG00006941 mRNA upstream 352583 28002502 ~ 28015328 (-) True AMCG00006941
AMCG00006940 mRNA upstream 366744 28016663 ~ 28047076 (-) True AMCG00006940
TU142323 other downstream 109872 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 1136539 26500015 ~ 26500681 (-) True G113530
TU141596 other downstream 4230013 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 6687384 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 7401014 20235856 ~ 20236206 (-) True G112420
TU142485 other upstream 617343 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 641536 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 1061300 28711219 ~ 28812548 (-) True G113833

Expression Profile