RNA id: TU142418


Basic Information

Item Value
RNA id TU142418
length 213
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G113723
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28058719 ~ 28058931 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttactaaaaactCTAATGATCAAACATGATATATAGTATATGTTAAGGAGCTTGAATGTCACCAAAGCCTGCAGATAAACAATACACATTGATATGTACTGATTGCATGTGTATTCAGCTCCCTAACAGTATTTgttggaagcacctttggcagcagttGGCTACTGTGAAACTTTTTACCAGGTTTGCAATGAGGGATGTAAAATTGC

Function

GO:

id name namespace
GO:0048731 system development biological_process

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142417 lncRNA downstream 152 28058361 ~ 28058567 (-) True G113722
TU142368 lncRNA downstream 202258 27856111 ~ 27856461 (-) True G113681
TU142359 lncRNA downstream 253566 27802490 ~ 27805153 (-) True G113673
TU142352 lncRNA downstream 258425 27799938 ~ 27800294 (-) True G113667
TU142308 lncRNA downstream 695689 27270459 ~ 27363030 (-) True G113631
TU142419 lncRNA upstream 197 28059128 ~ 28076291 (-) False G113724
TU142420 lncRNA upstream 197 28059128 ~ 28060592 (-) True G113724
TU142514 lncRNA upstream 348475 28407406 ~ 28407839 (-) True G113799
TU142539 lncRNA upstream 582198 28641129 ~ 28641437 (-) True G113823
TU142594 lncRNA upstream 804948 28863879 ~ 28867820 (-) True G113876
AMCG00006940 mRNA downstream 11643 28016663 ~ 28047076 (-) True AMCG00006940
AMCG00006941 mRNA downstream 43391 28002502 ~ 28015328 (-) True AMCG00006941
AMCG00006939 mRNA downstream 88340 27964967 ~ 27970379 (-) True AMCG00006939
AMCG00006938 mRNA downstream 234645 27805483 ~ 27824074 (-) True AMCG00006938
AMCG00006934 mRNA downstream 381519 27668786 ~ 27677200 (-) True AMCG00006934
AMCG00006948 mRNA upstream 82326 28141257 ~ 28144216 (-) True AMCG00006948
AMCG00006949 mRNA upstream 158682 28217613 ~ 28223587 (-) True AMCG00006949
AMCG00006955 mRNA upstream 691331 28750262 ~ 28811479 (-) True AMCG00006955
AMCG00006957 mRNA upstream 808971 28867902 ~ 28868926 (-) True AMCG00006957
AMCG00006956 mRNA upstream 821386 28880317 ~ 28892493 (-) True AMCG00006956
TU142323 other downstream 531371 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 1558038 26500015 ~ 26500681 (-) True G113530
TU141596 other downstream 4651512 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 7108883 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 7822513 20235856 ~ 20236206 (-) True G112420
TU142485 other upstream 208331 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 232524 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 652288 28711219 ~ 28812548 (-) True G113833

Expression Profile