RNA id: AMCG00006948


Basic Information

Item Value
RNA id AMCG00006948
length 2242
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00006948
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28141257 ~ 28144216 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTACTTATAATTTTGTAtgcatattttagattttgcaTTCGAAAACATATGATCTGCAGACTATTTCATGCACTGCAAAAAATTCAGTGTACCAATCAATTGATATAGGGGGTTGAACACATTACCTTTTATAGGCCTGACATTTCAAAGTACAGGCGGATCTTGtggtaaaatgtaaacaaaacccgGGTCAAAATTTGGGAAAGCAGCACTCGGCTCTCTGTTGATTCCTGTGATGTGACCCAACTCACGCATGgtattttattaacaattaagGGGGAAAATGTCATCCGAAAAAATTATCGCAATAATTATGGAGGATAAAACTTACAACGTGAGCAAAACCAAACTGATTGAAAAAAGCGATTATTTCAGAGCTCTGTACAACTCCGGGATGAGAGAATCCGCAGAGGACTCAGTGCAGCTGCACGGTCTGAGCGTCAGCGGACTGGAGTTGGTCATTGAGTTCATCAACACTTCCAAAGTACAGATAGATAACGAAACTTTGGAGGATTTAATCGAGACGGCTTCTTTCCTGCAAGTAACCTCCATTTTAAAACTCCTCCTGTCCGAAATAAAGTTAGATAATTGTGTAGAACTCTACAAGCTTTCTGAAGTGTATGGGACACATGACCTTAGGAATGCTTGCCTGAAGTACATGAGCTGCCATTACCACCCGATGTTGAGGAGGCAAGGGTTCAAGCTCTTCCCTGCGGCGCTTCGGGATCAGGTGCGAGAACTGCGCATGAAAGGCACCGCGACTTTGGTTGCTATTGGGGACTTCATTGGCACATGCTTGGATCTTGCTCACCAAGACGAGCCGTGGTCCATGCTGCGGTATGGCGAGTTGGACCAGAGGTGGATGCCGCTTGCCAGTAATTTGCCTTCCGATATGGTCAACGTAAGAGGTTATGGTTCTGCCGTTTTGGACAATTATCTGTTCGTAGTTGGAGGCTACAGAATGACTAGCCAGGAGATCTCTGCAGCTCACTGTTACAACCCCTGTCGAAACGAATGGAATCATATAGCACCCCTAAACCAGAAAAGGTCAAATTTTAAACTTCTTGCTGTGAGTGGGAAGCTATATGCTGTAGGGGGCCAGTCTCTGGGCACTGTGGAGTGCTACAACCCTGAGCAGGACTGGTGGACCTTTGTGGCCTCTCTCCCAGATCCACTGGCTGAGTTCTCTGCTTGTGAGTGCAAGGGCATGATTTACGTCATGGGTGGCTACACTTCAAGAGacAGGAACATGAACGTCCTGCGCTATTGTCCCAGCTCTGATGCCTGGTTTATCTTCCAAGCTTGCAAGGCCCACGTTCGTAAGCAACAAATGCTCTCAGTAGAGGACACAATTTACCTGGTAGGGGGCTACATCCACGAGATTGAGCCTAACAAGAAGACCAGCCAGACGGAGGATATGCTCACTGTCCAGTCCTACAACATCAACACAGGCGACTGGCTCTACCTGAAGGAGAACACCTCCAAGTCTGGATTAAACCTGACATGTACACTGCACAATGATGGTATTTACATCATGAGCAGAGACATCACCCTGCCCACCAGCCTCGAACACCGTGTCTTCctcaaatataacattttctctGACATGTGGGAGTCTTTCAGACGGTTCCCAGCATTTGGACAAAACATGCTGCTGTGTTCCCTGTACTTGcctaatgttatttaaaatagcaTAATATGCTGTCTGCCCCTtgggacaaaaaaacaaaatcaacaacaagCATTTCATGCTCTGAACAGGAGCCATAGAGTGGTACTGCTGGAGTCACAGTAAAGGTCAACAACCCAACCCACCTTAATCCCAGACTTCTTTGAAACCACAGGTTTTTAAAGATGCCATTAACATGTTGAaggaaattaatgtatatattaaaatgtttaacttgCACAGATATTATTGCTACATTGAAGCAAGGCATTATGACAACATACCCATATTAGTACTAAAATTGAAGCCGGAATCGTTTTGAATTTTTTGGggaattttcattatttttatttattgcagttactaaaatttttattttggtatttgtgtcaatgtacagtattttcaCAATACTGGTCAGCTGTCACCTCAAACAGACTGGTAGCAGAAATCATCATCGACATTCCTTATTTGAGAGAGAACAGTTCTGTGCAAATTAGAGTGATATGTTACCAATGAAAAAAAGATGAGTGGGTTAAGTAACATTAAATAAGTGGCTAATTGTAAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142419 lncRNA downstream 64966 28059128 ~ 28076291 (-) False G113724
TU142420 lncRNA downstream 80665 28059128 ~ 28060592 (-) True G113724
TU142418 lncRNA downstream 82326 28058719 ~ 28058931 (-) True G113723
TU142417 lncRNA downstream 82690 28058361 ~ 28058567 (-) True G113722
TU142368 lncRNA downstream 284796 27856111 ~ 27856461 (-) True G113681
TU142514 lncRNA upstream 263190 28407406 ~ 28407839 (-) True G113799
TU142539 lncRNA upstream 496913 28641129 ~ 28641437 (-) True G113823
TU142594 lncRNA upstream 719663 28863879 ~ 28867820 (-) True G113876
TU142623 lncRNA upstream 927965 29072181 ~ 29074799 (-) True G113905
AMCG00006940 mRNA downstream 94181 28016663 ~ 28047076 (-) True AMCG00006940
AMCG00006941 mRNA downstream 125929 28002502 ~ 28015328 (-) True AMCG00006941
AMCG00006939 mRNA downstream 170878 27964967 ~ 27970379 (-) True AMCG00006939
AMCG00006938 mRNA downstream 317183 27805483 ~ 27824074 (-) True AMCG00006938
AMCG00006934 mRNA downstream 464057 27668786 ~ 27677200 (-) True AMCG00006934
AMCG00006949 mRNA upstream 73397 28217613 ~ 28223587 (-) True AMCG00006949
AMCG00006955 mRNA upstream 606046 28750262 ~ 28811479 (-) True AMCG00006955
AMCG00006957 mRNA upstream 723686 28867902 ~ 28868926 (-) True AMCG00006957
AMCG00006956 mRNA upstream 736101 28880317 ~ 28892493 (-) True AMCG00006956
AMCG00006958 mRNA upstream 758125 28902341 ~ 28906211 (-) True AMCG00006958
TU142323 other downstream 613909 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 1640576 26500015 ~ 26500681 (-) True G113530
TU141596 other downstream 4734050 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 7191421 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 7905051 20235856 ~ 20236206 (-) True G112420
TU142485 other upstream 123046 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 147239 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 567003 28711219 ~ 28812548 (-) True G113833

Expression Profile