RNA id: TU142419


Basic Information

Item Value
RNA id TU142419
length 788
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G113724
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28059128 ~ 28076291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGCCATATTTCCTTACTAGTGTTTTGCTTTATGTTTGTGATGTGTAATtcgtttttttatatataatattttgttttataatgcgAGAAGTGCGTATTTGATATCGCAGTATGTATTGGAGTTTTAATTTGAAGTCGTTCAATTTATGATCATCCAGTGataaaattataatgaatatgaGGATGTAGTACAGAACTACTGCAGAGATTCggatttaaacatatatatacgcAAAAATGAGGAGCAGTTCCTCCACATCTTTGGCCCAAGCAAGAAGTCTGGGTTCTGTTCGTCTTGGCAGCAGTCCACTGCTTTTCCAAGGCTCAGCCCAAGCGCTAAGCCTCTTGGATATGGCTGTCGAACATCTAATGGTGTTGCGAGATTTTAAGGGGGGCCTTGAGTCTTGTGAAAAAGGTCTGGACAGCCTCAGCAGTCTCCCTGAGCATGAGGACACAACCAGccATTCCCTCAGCTTTTCCTTGGATCTCTGACCTTTTCCAGATGTTTAGACAGATGTGGGAGGCAATGTTTGCACCATATTACAGAGTGTCTGTCGCTTGCTGAGTTACATGACAGTTTCTCTCGCATTACTTTCTTCAACCCAGgtgaatgtaaattaatatttgcacCCAATAGACAAGTAACTTGGCGTAAAGTGTCTCTGTAGTGTTCCATGTATGCTTCTCAGAAAATtctatgctttgtatttttcttacgattatttttttttgtaaataagctctgaaatgaaagcctgtggagaagcaaaataaacaacctAAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142418 lncRNA downstream 197 28058719 ~ 28058931 (-) True G113723
TU142417 lncRNA downstream 561 28058361 ~ 28058567 (-) True G113722
TU142368 lncRNA downstream 202667 27856111 ~ 27856461 (-) True G113681
TU142359 lncRNA downstream 253975 27802490 ~ 27805153 (-) True G113673
TU142352 lncRNA downstream 258834 27799938 ~ 27800294 (-) True G113667
TU142514 lncRNA upstream 331115 28407406 ~ 28407839 (-) True G113799
TU142539 lncRNA upstream 564838 28641129 ~ 28641437 (-) True G113823
TU142594 lncRNA upstream 787588 28863879 ~ 28867820 (-) True G113876
TU142623 lncRNA upstream 995890 29072181 ~ 29074799 (-) True G113905
AMCG00006940 mRNA downstream 12052 28016663 ~ 28047076 (-) True AMCG00006940
AMCG00006941 mRNA downstream 43800 28002502 ~ 28015328 (-) True AMCG00006941
AMCG00006939 mRNA downstream 88749 27964967 ~ 27970379 (-) True AMCG00006939
AMCG00006938 mRNA downstream 235054 27805483 ~ 27824074 (-) True AMCG00006938
AMCG00006934 mRNA downstream 381928 27668786 ~ 27677200 (-) True AMCG00006934
AMCG00006948 mRNA upstream 64966 28141257 ~ 28144216 (-) True AMCG00006948
AMCG00006949 mRNA upstream 141322 28217613 ~ 28223587 (-) True AMCG00006949
AMCG00006955 mRNA upstream 673971 28750262 ~ 28811479 (-) True AMCG00006955
AMCG00006957 mRNA upstream 791611 28867902 ~ 28868926 (-) True AMCG00006957
AMCG00006956 mRNA upstream 804026 28880317 ~ 28892493 (-) True AMCG00006956
TU142323 other downstream 531780 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 1558447 26500015 ~ 26500681 (-) True G113530
TU141596 other downstream 4651921 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 7109292 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 7822922 20235856 ~ 20236206 (-) True G112420
TU142485 other upstream 190971 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 215164 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 634928 28711219 ~ 28812548 (-) True G113833

Expression Profile