RNA id: TU142623


Basic Information

Item Value
RNA id TU142623
length 2619
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G113905
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 29072181 ~ 29074799 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAACatatcatttttatatgtaaatcAATGATCCAAAGCTAACTGCCAAGTGGGCAATACAATTTCTGGAAAACTGAAGGATGAAAGTGGTTCATTTACatgacctaaatccaattgaacACTCTGGGAGTGGGTGGAAACTCATACTAAAATCTGTCAAAATCCTTGTGAGATGTATACACAGATACAGTGccagtattcaccccccttggcatttttcctattttgttgccttacaacctggaattaaaattgattttttggggtttgtatcatttgatttacacaacatgcctaccactttgaggATGCAAAgtatttgttattgtgaaacaaacaagaaataagacaaaaaaaaaacatagaaaatgtaagcgtgcataactattcaccccctaatgtcaatactttgtagagtcaccttttgcagcaattacagctgcaagtctcttggggtatgtctctataagcttggcacatctagccactgggatttttgcccattcttcaaggcaaaactgctccagctccttcaagttggatgggttccgctggtgtacagcaatctttaaatCATATCATAGGTTCTCAATTgaagtctgggctttgactaggccattccaagacatttaaatgtttccccatAAACCACTCGaatgttgctttagcagtatgcttagggtcattgtcctgctggaaggtgaacctccgtcccagtctcaaatctctggaagactgaaacaggtttccctcaagaatttccctgtatttaacaccatccatcattccttcaattctgaccagtttcccagtccctcccgatgaaaaacatccccacagcatgatgctgccgccaccatgcttcactgtggggatggtgttctcggggtgatgagaggtttTGGGCGTGCGCCAGacatagcattttccttgatggcccAAAAGCTCagttttagtctcatctgaccagagtaccttcttctaTACATTTgaggagtctcccacatgccttttggcgaacagcaaacgtatttgcttatttttttctttaagcaatggcttttttctggtcactcttccgtaaagcccagctctgtggcgGGTACAGCTTAAACTGGTCCTAAGGACAGATACTCCAAactccgctgtggagctttgcatctccttcagggttatctttggtctctttgttgcctctctgattaatgccctccttgcctggtctgtgagttttggtgggcggccctctctttccattttttaataatggatttaatggtgctctgtgggatgttcaaagtttcggatatttttttataacccagccctgatctgtacttctccacaactttgtccctgacctgtttggagagctccttggtcttcatggtgctgcttgcttggtggtgccctttgctcagtggtgttgcagatgCTGGGGCCTTTATATACTGGGTgcatatatactgagatcatgtgacagatcatgtgacacttagattagacacaggtggactttaatATGTGAcctctgaaggtaattggttgcaccagatcttatttaggggcttcatagcaaagggggtgaatacatatgcacgcaccacttttccgtttttaattttttaaattttttctgaacaagttattttttattttttttcaaaacaagttattttttaaatttcacttcaccaatttggactactTTATGTATGttcattacatgaaatccaaatacaaatctgtttaaattacaggttgtaatgcaacaaaataggaaaaatgccaaggaaaaaaaaaggggggtgaatactttcgcaaggcactgtatatagcTACAAAATGCTTGTATCATACTCCAccacacatatgtgtgtgtgtcattgccatttggaaaatgtaaagGACTTCTATACAGTACCATACtacaaatcaagaaaaaaatatttatttagcttcACAGTCAAATTAAAGGTGCTGCTCATTGTATTGTCCACCACAAAACAAATTGGTCCTTTTCAAAGTTGTTGTTAGTTTCCTAGTCAGATGGGCAGGCAAACAGGCAAAGTAGATAGATTGGTAGAGGGTCAGATGTCTACCCaaaattaatatgtttaatcACTGCCTCTGATTGTCGTAGTCCTTTtggtcatttatttaaaataatcttacaAGATCCTCTTTTACAGATGGTACTTTGCAATGAGAGGAGGTGGTGGTGAAGACAGATCTAAAACTTCACAATCTATTGTACTCAGCAGAGCTGAACAAAGATGATATATGGACACTGTTGTGGAACATGACAACTTACTTTACTCGATATACAATTTAATATGACTGTTTGTTAGTGCATAACATGATTGCATATTGTCAAGTGTGTATTGTAACTAAGCTAACATTGGATTTCgaaggtttaatttgttttgtatagcCTCCCTTTCTGCATTTAGGAAAGACATTTTACACATGAATGCCATAAGTGCCCATAAGTACTCAAGTACTTATCTTAATCTTATTCaagtttattacattaattttaatttggctATGCATACACATCTATccacttacactcacctaaaggattattaggaacacctgttcaatttctcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142594 lncRNA downstream 204361 28863879 ~ 28867820 (-) True G113876
TU142539 lncRNA downstream 430744 28641129 ~ 28641437 (-) True G113823
TU142514 lncRNA downstream 664342 28407406 ~ 28407839 (-) True G113799
TU142419 lncRNA downstream 995890 28059128 ~ 28076291 (-) False G113724
TU142420 lncRNA downstream 1011589 28059128 ~ 28060592 (-) True G113724
AMCG00006960 mRNA downstream 39284 29027412 ~ 29032897 (-) True AMCG00006960
AMCG00006959 mRNA downstream 105657 28931030 ~ 28966524 (-) True AMCG00006959
AMCG00006958 mRNA downstream 165970 28902341 ~ 28906211 (-) True AMCG00006958
AMCG00006956 mRNA downstream 179688 28880317 ~ 28892493 (-) True AMCG00006956
AMCG00006957 mRNA downstream 203255 28867902 ~ 28868926 (-) True AMCG00006957
AMCG00006967 mRNA upstream 93764 29168563 ~ 29257106 (-) True AMCG00006967
TU142549 other downstream 259633 28711219 ~ 28812548 (-) True G113833
TU142485 other downstream 779583 28267262 ~ 28292598 (-) False G113775
TU142484 other downstream 779583 28291455 ~ 28292598 (-) True G113775
TU142323 other downstream 1544833 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 2571500 26500015 ~ 26500681 (-) True G113530

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1156586 True 3402 lncRNA 0.39 2 NC_048575.1 74553587 ~ 74557100 (+)
eurasian perch (Perca fluviatilis) TU175911 True 513 lncRNA 0.47 1 NC_053124.1 1584094 ~ 1584606 (+)