RNA id: TU175911


Basic Information

Item Value
RNA id TU175911
length 513
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G130613
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 1584094 ~ 1584606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cTCTGAGCTTGCCACATCTTACCACTgggatttttgcccattcctccttgcaaaactgcTCCAGCTCCTTCAAGTTGGATGGTTTGTGCTTGTGAACAGCAATCTTTAAGTCTGACCACAGATTTCCTATTCGATTGAGGTGTGGGCTTTGACTAGGCCATTCcaacacatttacatgtttccCCTTAAACCACTCAAGTGTTGCTTTAgcagtgtgtttggggtcattgtcctgctggaCGGTGAACCTCCGTCCTAGCCTCAAATCACGCACAGAGTGGTACAGGTTTTGCTCAAGAATATCCCTGTATTTGGCATCATCCATCTTTCCCCCAACTCTGACCAGTTTCCCAGTCCCGGCTGCTGAAAACATCCCcacagcatgatgctgccaccaccatgtttcactgtgggtatggtgttctttgggtGATGTGATGTGTTGTGTTTGCGCCAGACATAGCGTTTTCTTTGATGGCCTAAAAGTTAAATTTtagtctcatcagaccagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175881 lncRNA upstream 145387 1438490 ~ 1438707 (+) True G130585
TU175867 lncRNA upstream 231877 1351885 ~ 1352217 (+) True G130571
TU175865 lncRNA upstream 236447 1347277 ~ 1347647 (+) True G130569
TU175861 lncRNA upstream 253004 1330389 ~ 1331090 (+) True G130565
TU175858 lncRNA upstream 295773 1285425 ~ 1288321 (+) True G130562
TU175912 lncRNA downstream 1875 1586481 ~ 1587358 (+) True G130614
TU175914 lncRNA downstream 17291 1601897 ~ 1602162 (+) True G130616
TU175916 lncRNA downstream 18251 1602857 ~ 1603511 (+) True G130618
TU175918 lncRNA downstream 19050 1603656 ~ 1603867 (+) True G130620
TU175921 lncRNA downstream 23851 1608457 ~ 1608694 (+) True G130623
XM_039821234.1 mRNA upstream 323438 1185673 ~ 1260656 (+) True nxph1
XM_039820834.1 mRNA upstream 422030 914845 ~ 1162064 (+) True thsd7aa
XM_039820827.1 mRNA upstream 776331 779513 ~ 807763 (+) True LOC120571743
XM_039820657.1 mRNA upstream 906766 673133 ~ 677328 (+) True txnipa
XM_039819180.1 mRNA upstream 926567 647671 ~ 657527 (+) True chtopa
XM_039819814.1 mRNA downstream 108068 1692674 ~ 1823924 (+) True phf14
XM_039820989.1 mRNA downstream 348105 1932711 ~ 1945376 (+) True rpa3
XM_039821130.1 mRNA downstream 386454 1971060 ~ 2024505 (+) True col28a1a
XM_039821202.1 mRNA downstream 493627 2078233 ~ 2093598 (+) True sdhaf3
XM_039820391.1 mRNA downstream 625490 2210096 ~ 2216292 (+) True tac1
TU175797 other upstream 712744 870810 ~ 871350 (+) True G130504
XR_005641367.1 other upstream 915417 668544 ~ 668677 (+) True LOC120572112
XR_005641360.1 other upstream 915958 667997 ~ 668136 (+) True LOC120572106
XR_005641359.1 other upstream 917527 666442 ~ 666567 (+) True LOC120572105
XR_005641357.1 other upstream 917950 666074 ~ 666144 (+) True LOC120572102
TU176696 other downstream 2915738 4500344 ~ 4500961 (+) True G131253
TU176698 other downstream 2916462 4501068 ~ 4501732 (+) True G131255
TU176724 other downstream 3004789 4589395 ~ 4599956 (+) True G131277
TU176855 other downstream 3255230 4839836 ~ 4847497 (+) True s100v2
TU176984 other downstream 3842163 5426769 ~ 5433207 (+) False ppp1r11

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU209950 True 4119 lncRNA 0.39 3 NC_048566.1 75636331 ~ 75731310 (-)
rainbow trout (Oncorhynchus mykiss) TU319115 True 207 lncRNA 0.47 1 NC_048567.1 60380979 ~ 60381185 (-)
striped catfish (Pangasianodon hypophthalmus) TU142623 True 1729 lncRNA 0.42 2 NC_047601.1 24496919 ~ 24498668 (+)
striped catfish (Pangasianodon hypophthalmus) TU319115 True 447 lncRNA 0.43 1 NC_047611.1 14740215 ~ 14740661 (-)
bowfin (Amia calva) TU142623 True 2619 lncRNA 0.39 1 CM030134.1 29072181 ~ 29074799 (-)