RNA id: TU1156586


Basic Information

Item Value
RNA id TU1156586
length 3402
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1016932
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 74553587 ~ 74557100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATTGGCATACTTTTTCGTAGAAGATGAGTGCAAATAAAGAGCTTCTGATGAATCTACCAGTCACTGAGCCATGGACCACAAGGCATTGATAAATACAAGCTTTTGGAGCAATACTCTACAATACAAGGCTTGAATCAGAAAATAAACATCAACGCTTACGTAATATAGGAAGGTATATGGAGAAAAATAAATctgaatgaacaaaaatatacgacaaaaccacaacaacacaatacataCATTCATAAAGTAATAAATCCTGTACACCAAAACTGCTGTAGTGAGTTCACATGGAATATTGATTTACGGCAACTGACGATAAAACGaggtctacagtgccttgcaaaagtattcatccccctaggtgttttcctattttgttgcattacaacctgtaatttaaatggatttttattctgatttcatgtaatggacatacacaaaatagtccaaattgATCTGGAGCAACCTTAttagtcacataattagttaaataaagtccatctgtgtgcaatctaagtgtcacatgatctcagtatatatacacttgttctgaaaggccccagagtctgcaacaccactaagcaaggggcaccaacaagcaagtggcaccatgaagaccaatgagctctccaaacaggtcagggacagagtTGTGGAGAACTAtagatcagggttgagttataaaaaaatatccgagACTTTGAACAtaccacggagcaccattaaatccatcatTAAAaattggaaagaatatggcaccacaacaaacctgccaagagagggccgcccaacaAAActtacggaccaggcaaggagggcattaatcagaggcaacaaagagaccaaagataaccctgaaggagctgcaaagctccacagcggagattggagtatctgtccataggatcactttaagccgtacactccacagagctgggctttacgaaagagtggccagaaaaaagccaatacttaaataaaaaaataagcaaacacgttttgtgttcgccaaaaggcatgtgggagactccccaaacatatggaagaaggtactctggtcagatgagactaaaattgagctttttggccatcaaggaaaatgctatgtctggtgcaaacccaacacctcacatcaccccgagaacaccatccccacagtgaagcatggcggtggcagcatcatgctgtggagaggtttttcatcggcagggacaggGAAACCGGTCAGAATAGAAGAAATTATGGAttgtgctaaatacagggaaattcttgaggaaaacctgtttcagtcttccagagatttgagactgggacggaggttcgccttccagcaggacaatgaccctaagcatactgctaaagcaacactcgggtggtttaaggggaaacatttaaatgtattggctttgactaggccattcccagacctcaatccaattgagaatctgtgctaTAACTTAAAgactgctgtacaccagcggaacccatccaacttgaaggagctggagcagttttgccttgaagaatgagcaaaaatcccagtggctagatgtgccaagcttatggagacataccccaagagacttgcagctgtaattgctgcaaaaggtggctctaaaaagtattgactttgggggggttgaatagttatgcacactcaagttttcagatttttttttgtctaatttcttgtttgtttcacaagaaaaaatattttgcatcttcaaagtggtaggcatgttgtgtaaatcaaatgatacaaaccccccagaaatccatttgaattccaggttataaggcaacaaaatagggataatgccaagggggtgaatactttcactagCCACTGTACATTTTTCACTAAATGTTGATTGGTTTTTCTgttgatttgtttttttttccaGCACAATTAGTTATTTCTCTTCACGATTATACTGTGCAAATATAATATTACAATCATTCTCTTAAACATCGCTTTTGAACATTTCCTTTTTTTTTACAAAGCAGGCTGTATCGTCTCACTAACTGTTGTATTGGTTGGTGATCCTACGCTGACAACAGTTCCATCAGAAAATACCCCAGGGATCATATACTTACTGCAGAGCTGAAAGAGTCAACTTTGTATCGTAATAACGAGAACAGATCCTTTGTAGTCCATTTCATGCACTTAAAAGTTGTAAACAGTACAAATATAAATGACCCACGTACAATATCTGATTTCCAGTAATTCCAAAATAGACAGATGTACTCCAAAAAAACAGCAGCAATTTGTTTGTATGCATTTCCAACATATTTTACTGtataatatagtgttgtagaaaGGGCTTTATACAGGATTGGATTGTCTGGATCTAAGCCATGGCTGTACAGAGCCCATGGCAGTAGCTTTACAGTTCTTACTGAGACACAATCTGACTGCACTCTAGCTTGCTTAGATTTCAAATATCGCTGTGAAATATATGATAGAAAAGGCCAGGTCATGGACAGAGTCATGTTACTAGATGGTGTCTGTTATGGTGTCTGTTCAGAAAGTGCTTTATCAATTATAGGGCTGACAAATTCCTGAAGTGAATCGATTGTGTCATCATTAACGTACGTAGGTAGTGACCTTAGCTAGCTAtgtcttttttgtttgtttttttcctttTCTGCGTTAAAACACCAAAGTAACCACTATACACCTACTTCTCAGTGACAGCATTTGTCCAAGGTGTTGATGCACATTTCTACTAAGTAATGAGATACATTTGAAGTGTCAGCGTTTTCACATTAGTGTGAGAGATTTCTAGTCAGTCAGTCTAGGTCTTCTACTGAATGACCCAGAGCTGAGAAAAAAGGCTGTTGTTCAAACATCTCGCACCCTATTTCCCAtctagtgcactacctttgacgtTTTTGACAGGTccgtgtagggaataggatgcatcCTCAACAGTGTTCACAGGCAATAATCAAAGCACAGAACAGTTTCCTACCAGTGGAGTCTTCACATTCAATAGTGAATAATGACTTTAAAATACAGCTTTGAGACTAACATGTGGAGAACACAAACACAAGAGACCATGAGGTACACTGACAAATGACAAAAACAGTTGACAGACAGGAAATGGCAAAACAATTACTTAAAAATGTAAATTTCACAATTCATTACATAATTACATTCATTCTAAAAACTAGTTCATTCTGATGCATTTTCCGTACACAATGAAGTGAGACATGACACAAAAAAAACTCTCATTAAAACAAGTGACATTGAGAAAAATACATTCCAGAATAAAGAAACTAACCAACAAACTGAACAGGTCATTTGAGTAATGAAATATAACACATCTTCCATGTGATTAAACAATAAACCCAAAATATGAGTTCAGAGGACGTTGAGAAGTCTAGGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1156345 lncRNA upstream 4989 74466631 ~ 74548598 (+) True G1016703
TU1156351 lncRNA upstream 80425 74472680 ~ 74473162 (+) True G1016709
TU1156338 lncRNA upstream 95678 74457600 ~ 74457909 (+) True G1016696
TU1156332 lncRNA upstream 101940 74450993 ~ 74451647 (+) True G1016690
TU1156331 lncRNA upstream 114468 74438848 ~ 74439119 (+) True G1016689
TU1156666 lncRNA downstream 94827 74651927 ~ 74652320 (+) False G1017006
TU1156667 lncRNA downstream 94827 74651927 ~ 74657323 (+) True G1017006
TU1156650 lncRNA downstream 131320 74688420 ~ 74753450 (+) True G1016991
TU1156687 lncRNA downstream 171924 74729024 ~ 74729857 (+) True G1017024
TU1156724 lncRNA downstream 228758 74785858 ~ 74791532 (+) True G1017059
XR_005034808.1 mRNA upstream 32541 74519385 ~ 74521046 (+) True LOC118937457
XM_021622138.2 mRNA upstream 237006 74312531 ~ 74316581 (+) True spring1
XM_021622134.2 mRNA upstream 290881 74251421 ~ 74262706 (+) True LOC110536377
XM_021622130.2 mRNA upstream 302403 74237724 ~ 74251184 (+) False LOC110536376
XM_036936328.1 mRNA downstream 132355 74689455 ~ 74697615 (+) True rfc5
NM_001160679.1 mRNA downstream 150200 74707300 ~ 74711609 (+) False pebp1
XM_021619877.2 mRNA downstream 150551 74707651 ~ 74711617 (+) True pebp1
XR_005034744.1 mRNA downstream 165774 74722874 ~ 74731148 (+) True LOC118937390
XM_036936336.1 mRNA downstream 320356 74877456 ~ 74888265 (+) False LOC110536385
TU1154814 other upstream 1385145 73167603 ~ 73168442 (+) True LOC110535110
TU1154245 other upstream 1792642 72760521 ~ 72760945 (+) True G1014834
TU1153228 other upstream 2673915 71879296 ~ 71879672 (+) True G1013922
TU1152869 other upstream 2713117 71838338 ~ 71840470 (+) False G1013617
TU1157292 other downstream 743238 75300338 ~ 75306359 (+) False G1017593
TU1157297 other downstream 743238 75300338 ~ 75328737 (+) True G1017593
TU1158552 other downstream 1931408 76488508 ~ 76545421 (+) True LOC110536406
TU1158566 other downstream 1967038 76524138 ~ 76525567 (+) True G1018678
TU1159236 other downstream 2261405 76818505 ~ 76821553 (+) False G1019189

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU142623 True 1729 lncRNA 0.42 2 NC_047601.1 24496919 ~ 24498668 (+)
striped catfish (Pangasianodon hypophthalmus) TU468599 True 7432 lncRNA 0.38 2 NC_047622.1 10556784 ~ 10564263 (+)
bowfin (Amia calva) TU142623 True 2619 lncRNA 0.39 1 CM030134.1 29072181 ~ 29074799 (-)