RNA id: TU142514


Basic Information

Item Value
RNA id TU142514
length 434
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G113799
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28407406 ~ 28407839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagccataacattatgaccactgacaggtgaagtgaataacactgataatctcattatcatagcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttggaagcaggaaaaatgggcaagcataaggatctgagcgactttgacaagggccaaattgtgatggctagatgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggttcaaggaaggaaaagcagtgaaccggcgacatgGTCAtgggccaaggctcattgatgcacgtggggagtgaaggctggcccgtgtggtccgatccaacagaggagctactgtagctcaaattgctgaaaaagttaatgctggttctgatagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142419 lncRNA downstream 331115 28059128 ~ 28076291 (-) False G113724
TU142420 lncRNA downstream 346814 28059128 ~ 28060592 (-) True G113724
TU142418 lncRNA downstream 348475 28058719 ~ 28058931 (-) True G113723
TU142417 lncRNA downstream 348839 28058361 ~ 28058567 (-) True G113722
TU142368 lncRNA downstream 550945 27856111 ~ 27856461 (-) True G113681
TU142539 lncRNA upstream 233290 28641129 ~ 28641437 (-) True G113823
TU142594 lncRNA upstream 456040 28863879 ~ 28867820 (-) True G113876
TU142623 lncRNA upstream 664342 29072181 ~ 29074799 (-) True G113905
AMCG00006949 mRNA downstream 183819 28217613 ~ 28223587 (-) True AMCG00006949
AMCG00006948 mRNA downstream 263190 28141257 ~ 28144216 (-) True AMCG00006948
AMCG00006940 mRNA downstream 360330 28016663 ~ 28047076 (-) True AMCG00006940
AMCG00006941 mRNA downstream 392078 28002502 ~ 28015328 (-) True AMCG00006941
AMCG00006939 mRNA downstream 437027 27964967 ~ 27970379 (-) True AMCG00006939
AMCG00006955 mRNA upstream 342423 28750262 ~ 28811479 (-) True AMCG00006955
AMCG00006957 mRNA upstream 460063 28867902 ~ 28868926 (-) True AMCG00006957
AMCG00006956 mRNA upstream 472478 28880317 ~ 28892493 (-) True AMCG00006956
AMCG00006958 mRNA upstream 494502 28902341 ~ 28906211 (-) True AMCG00006958
AMCG00006959 mRNA upstream 523191 28931030 ~ 28966524 (-) True AMCG00006959
TU142485 other downstream 114808 28267262 ~ 28292598 (-) False G113775
TU142484 other downstream 114808 28291455 ~ 28292598 (-) True G113775
TU142323 other downstream 880058 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 1906725 26500015 ~ 26500681 (-) True G113530
TU141596 other downstream 5000199 23404175 ~ 23407207 (-) True G113050
TU142549 other upstream 303380 28711219 ~ 28812548 (-) True G113833

Expression Profile