RNA id: AMCG00006940


Basic Information

Item Value
RNA id AMCG00006940
length 1745
RNA type mRNA
GC content 0.37
exon number 8
gene id AMCG00006940
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 28016663 ~ 28047076 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCAGTTGGGAGAGCTTTGTGTCAAGATTGTGGCAGACATATCCAGCAGCTGGTTTCACAGCAATACCTCCTTTATTTCCATGAGTTTGATGTCATATACCACGCGATCAGGTCTTATGGGACTTTCAAACTATGGACTGTCGTGCTGTGTGAATTCACTGTTGCAGTCATTCTCTGCCACACAGGAGTTTACAGAGCTACTGAATAGATGGCAGATGTCTGATACAGACATCCCAGAGGATTGCAATACTCCACTTCAGCTTCAGCGTCTCCTTAGGAAGATGCAGAGTGACAAGTCACATACAGCACATCATGAAGACTTTCTACGGTGCCTGGACAggaatcacattcaatTATATGTACAGCATGATGTGGATGAAGTGTTTCTTTCAATATTGAATCTCATACAACAGCAAATAAGCGATAAGGAGTTGGCACAAGAAATCAAGCAGTTGTACAAAATTACAGTGGAGCAAAACCTGCAGTGTCAGACATGTTTTTACCTCACTAAGGACACCAGCTACTTCCTCAGCCTCCCACTGCCTATCTCTGACTGTTCCAACACAGTGGAAGAACGAAAGTATGACCTGTTTGCTGTTATAGTGCACTGCGGCACAGCTTTATTTGGTCATTATACAGCCTACATTAAATCATCTAGTGATCAAAGTTGGAATCATGCTGATGACAGCTATGTTCGCAAAGTTTCGTGGAAGGATGTGGAAAGTACATTTGGAGGATCCCGGAGGTGTGCATATATGTTGATGTATCAAAGAAGGCAAGACAAAATGCCCCAGAGTTCCAACTGATAAATTAGAAGGGGACACCCAGATGTCAAAGAATttagtggatttaaaaaaaaatcacattccatgtaaatcacatttatatCAATTTGCAAAAACTACAGTTTAGTTTCTATTAGTTTTCTGTTAttgaaacatgaaaatgtacttGTACCTGGTAATTTGACAACTTCAAGTACCCTTCAAGAAATGTATGCTTTCTGAGATTGATTATTTCTCTGCatagtttgtatatttatacatttgttaggAATAGTATTTGTAGAGGTcatggatttttttctttacatttttcaagtaTAATCATGATCTGTGATGCATCTATCTGTTTCAaatgataaaacattattttcgaAAGCGgagtttgtatatgtatatgtgtgtattttctgtgAGTAATAAGAATTAATACTGTCATGGATACcagtaaaatgcacaaaataaaatgaaaacatatactaccggtcaaaagttttagaacacctcatttttttccagtttgccAAGAGAATAATCTGTCAAACGAtttgcacattgtaggaatacagtgtaacttctatgcacaggagctgtgcataATACttccaaataatgcttaagagggtgcagtaacacagtatatagtTTTTGGTAagctaaactttttttaaaacctctggCAGTTTGCTGCTTACCTTTTACCATTTCaagttattcactggacttggaactgcttaaatttcaatgaaaaatggaaaaatgggggtgttctaaaacttcaGTGTCACTTGGGCTCTATGCAACTATTGACTTTGCTCCCCCTCctatacatacacacgcatTCCTAAACTAGATCAATTTACAgttaaaacattgtgtaaatacATTAGGCAATGGAAACACATGTTGTACATTGAcactaaaatgttaaatataataaaataattccattctcatttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142368 lncRNA downstream 160202 27856111 ~ 27856461 (-) True G113681
TU142359 lncRNA downstream 211510 27802490 ~ 27805153 (-) True G113673
TU142352 lncRNA downstream 216369 27799938 ~ 27800294 (-) True G113667
TU142308 lncRNA downstream 653633 27270459 ~ 27363030 (-) True G113631
TU142247 lncRNA downstream 851265 27165179 ~ 27165398 (-) True G113587
TU142417 lncRNA upstream 11285 28058361 ~ 28058567 (-) True G113722
TU142418 lncRNA upstream 11643 28058719 ~ 28058931 (-) True G113723
TU142419 lncRNA upstream 12052 28059128 ~ 28076291 (-) False G113724
TU142420 lncRNA upstream 12052 28059128 ~ 28060592 (-) True G113724
TU142514 lncRNA upstream 360330 28407406 ~ 28407839 (-) True G113799
AMCG00006941 mRNA downstream 1335 28002502 ~ 28015328 (-) True AMCG00006941
AMCG00006939 mRNA downstream 46284 27964967 ~ 27970379 (-) True AMCG00006939
AMCG00006938 mRNA downstream 192589 27805483 ~ 27824074 (-) True AMCG00006938
AMCG00006934 mRNA downstream 339463 27668786 ~ 27677200 (-) True AMCG00006934
AMCG00006935 mRNA downstream 366744 27637220 ~ 27649919 (-) True AMCG00006935
AMCG00006948 mRNA upstream 94181 28141257 ~ 28144216 (-) True AMCG00006948
AMCG00006949 mRNA upstream 170537 28217613 ~ 28223587 (-) True AMCG00006949
AMCG00006955 mRNA upstream 703186 28750262 ~ 28811479 (-) True AMCG00006955
AMCG00006957 mRNA upstream 820826 28867902 ~ 28868926 (-) True AMCG00006957
AMCG00006956 mRNA upstream 833241 28880317 ~ 28892493 (-) True AMCG00006956
TU142323 other downstream 489315 27402600 ~ 27527348 (-) True G113645
TU142176 other downstream 1515982 26500015 ~ 26500681 (-) True G113530
TU141596 other downstream 4609456 23404175 ~ 23407207 (-) True G113050
TU140946 other downstream 7066827 20854057 ~ 20949836 (-) False AMCG00006813
TU140776 other downstream 7780457 20235856 ~ 20236206 (-) True G112420
TU142485 other upstream 220186 28267262 ~ 28292598 (-) False G113775
TU142484 other upstream 244379 28291455 ~ 28292598 (-) True G113775
TU142549 other upstream 664143 28711219 ~ 28812548 (-) True G113833

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1128112 True 281 lncRNA 0.31 1 NC_048575.1 51410136 ~ 51410416 (-)