RNA id: TU139784


Basic Information

Item Value
RNA id TU139784
length 890
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G111621
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14712017 ~ 14753970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTTAGGGTTTGAAAGgctttgctgttgctgttttagTATAGTTTCTCCCGTGTATCAGGATTGTGACAGTAAAACTTCATGCCCTGCACTACATCGTGTTTGTAGACTCTGTGCTGTGATTTACTGAATTGTAAAGAGAGAGAATGTAACTTGTTTCACATCTGTGTCCTGTGGGTGCTCCAGTGACCGTGCCAAGAGTTGTAGGGTGAGGTTTGAGGTTCCCCTCCTTATTGAATAAAGGGGTGTCAATGCTTTGGGGGTTTAGGGTCACTCTCGCTTGTAACCAATGCCCTATATTGAAGTGGTGGAAGTTAATTTCCTGCTTACGTATCAGGAAATCTTCTGTGTATAATAAATGCCCTTTATTATGATGTCTGTTCATTACTAATTGTGCTGATCTTCATGTGCACTTAAATTCATATAAAGGCTGTCTTGTTAGAAAGGAAACGCGATCTCTCTGCAGCGACAGAGACACACTGTTATGGTGCATGCCCGAGGGAGAGGAAAGCGCTGTTGTTTGGGCGATGTCATGTTTCTCGCTTTCTGATCATATATTTCAGATGAATACTCGTTCTGTGAGGAAAACACAGGGCTGTAAAGTGCTGAATTGCATCACTTCTGACCTCAAGAAATGGCCACAAGGGTCTTCCTACTCACCCCGGGAGGAAATTGCATTCTATCGCTGCGTTTCTATATCATGGACATCTTGACAGAAACGATGATCTCAGTCTTTagcaactgaaatgttttcttcaagAGCATACCTTGATGTATGCTAATCTAATTGTATTGTGGACTGattgtaatgtactgtattatgtaatgcttttaaaacatttgttttcttatgctGTCTACCTTcacctgggtaagggcatctgaaggact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139617 lncRNA downstream 337707 14336701 ~ 14374310 (-) True G111481
TU139614 lncRNA downstream 399993 14311727 ~ 14312024 (-) True G111478
TU139585 lncRNA downstream 416468 14290467 ~ 14295549 (-) True G111452
TU139599 lncRNA downstream 465843 14244602 ~ 14246174 (-) True G111466
TU139582 lncRNA downstream 488689 14185608 ~ 14223328 (-) False G111451
TU139789 lncRNA upstream 15012 14728971 ~ 14730469 (-) True G111622
TU139788 lncRNA upstream 15741 14729700 ~ 14730469 (-) False G111622
TU139793 lncRNA upstream 19211 14733170 ~ 14734171 (-) True G111626
TU139797 lncRNA upstream 80759 14794718 ~ 14794949 (-) True G111630
TU139901 lncRNA upstream 823517 15537476 ~ 15537836 (-) True G111728
AMCG00006696 mRNA downstream 46218 14644607 ~ 14665799 (-) True AMCG00006696
AMCG00006695 mRNA downstream 79246 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006690 mRNA downstream 323631 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006687 mRNA downstream 345530 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006681 mRNA downstream 441326 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006698 mRNA upstream 94902 14808861 ~ 14818516 (-) True AMCG00006698
AMCG00006702 mRNA upstream 191589 14905548 ~ 14927342 (-) True AMCG00006702
AMCG00006706 mRNA upstream 850640 15564599 ~ 15574755 (-) True AMCG00006706
AMCG00006707 mRNA upstream 913257 15627216 ~ 15631171 (-) True AMCG00006707
AMCG00006711 mRNA upstream 972733 15686692 ~ 15691047 (-) True AMCG00006711
TU139625 other downstream 347595 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 1208789 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1833361 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1833361 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 2571624 12137182 ~ 12140393 (-) True AMCG00006625
TU139783 other upstream 11692 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 11692 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1038862 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 2918932 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 3625311 18339270 ~ 18341210 (-) False AMCG00006754

Expression Profile