RNA id: AMCG00007361


Basic Information

Item Value
RNA id AMCG00007361
length 2981
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00007361
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15874967 ~ 15890365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAACCagaggcacagagagacagagacacgcaAGGGGACTGAACACTACTGCAACAGCAGCGACTCAAGACAGAAGAATTTTGTGATATTCTAGGggggttatttttttatttttccttcattgctgccagtatatatttttattttctgcggTACAGCTCTGGGTGgggtttctgtttcttttgggggcaatctttttttttttacccggGGGGGGGGACAATTTCTGCCTGGATGCCTGTGGATATTGTGATATCCCCCCCAGAGGAGAGTTTCTGGACTGAGATGCACGAGAGTGAGATGAAGCTGAAAATCAGGGTGCGCAGGATGAAGGAGGGAAGGGAGCTGAGAGggGGCTTTGCAGCTTTCTCCTCCTGTTTCCCAGGACTGTGTGAGGGCAAGCCAGCGGCCATCTTGCCCATGAGCATTTCTCAGCCCTGTATGCCGGTGGCCAATGTTGGCCCAACGCGCATCCTGCCACATCTTTACCTGGGCTCACAGAAAGACGTGTTGAACAAGGACTTAATGGCCCAGAACGACATCACCTACGTCCTGAACGCCAGCAACACATGTCCCAAGCCGGATTTCATCTGTGAGAGCCACTTCATGCGCATTCCTGTCAATGACAACTATTGCGAGAAGCTTCTACCTTGGCTAGACAAAAGCAATGACTTCATTGACAAAGCAAAGGTCTCCAACTGCAGAGTCATCGTCCATTGCCTGGCTGGCATCTCTAGATCTGCCACTATTGCCATCGCTTACATCATGAAGACCATGGGCTTGTCCTCAGATGACGCTTACAGGTTTGTGAAAGACCGGAGGCCCTCGATATCACCCAATTTTAACTTCCTGGGGCAGCTGCTGGAGTTTGAGAAAGGCTTGAAGCTGCTCAAAGCTTGGTCCACCAGCCCTGGCAAGTCCCTGACGGAGAGGCATGAAGAGGAGCCCAAGCAGAAGCATGCAGAGACTGGCACTGGGAGCCCTGGAAGCCCAGAGAGTGGACTCAGTGGCCCAGGGGCCTCTGAGACAGAGCCGCGTTTGAAAATCTCTGAGGCAGAGGCTGAGCCGGAGAAAGGGGAGGCCAAGCTAGCGTCTCCGACATCGCTGCAGCAGGGCCTTATAGGCCTTCATCTATCGACTGAGCGAATCCTGGACACCAACCGCCTCAAGCGTTCCTTCTCCCTGGACATCAAGTCGGCCTACTCCCCCAGCCACTGCCCAAGGGCCATCCCTGCTGTGGCCATCACTCCCATGAACTCTGAGGACATCCCCAAGCTCTGCAAGCTTGACAGCCCTGGAACCACCAATGGCTTTTGCCAGTTCTCTCCAGTCCTGGACAGCccgggcagcagcagcagcagcagtggtggtggtagtggtgggGGCGGGGACTCGAGTGGGGAAGCCAGGACACGACAGCGGAGAAAAGGGAAGCACAATGGCAGCGCTGCAAGCTCTCCGGCCCACTCTTTGAGTTTGAACTTCAGCAGGACAGGGCCCGTGCACAAGAGCCCCAGCCTGGATGAGAACCTGAAGGCCTCGCTCTTGCTGAGCTTGCCCAATGGCCACCAGCCCCTCGTCGGCTCCAATGGGGTGTGGACCAACCACAGGGAGACAGTGCAGGCCACCACCCCAGGCACTCCCACTGGCGAGAGCCCCTGGTACTTTGGTGCTGACTCCCCAGCCTCTGGGACCTCCGTACGTTTCGGGAGCAGCTCGGCATACATGTCATTCGGATGTAGTGCGCTGGCGGGGAGCTGCGAGGGGGTTCGACTACGAGAGAAGCACGAGGACAGCACTGGCAGCACAGCAGACAAACAGTTCAAACGCCGGAGCTGCCAAATGGAGTTTGAGGACGGCATCTCTGAAACAAGGTCCAGGGAGGAGCTGGGAAAAATAGGCAAGCAGTCGAGCTTCTCTGGCAGCATGGAAATCATCGAGGTCTCCTGACATGCTGGCCAAGAAGGGGAAAAGGAACTGTTTCTTAGGGAAAGGGATttcaggggggagggggagaggggaagggcgtggttatttataatataaatcaattttttgttttcaattttgtgttttacGATTTAAACACTAAAGATGACAAAAAGTTCTGtagctctgtctgtctctgagcATGCCAGGAAAAAAGGGGGAGGAAGCAGCCATCTGCAATAGTTTctgtaacaagaaaaaaagagagaaagagagagaaaaggacagCTTCCAAATAAGATTGATAAGATGGGGGGGATGCTGAAACCAGTTGCCAAGAACTTCCCTACCAAACAAACAATGCATGTTCATTAGTACGCTTTTCAGTAAAATCCCAAATTTTCCCGTTGAATGTCTAAATTtgggaatttaaaaatacatttatgtttgcTGCTTCATCACACCATGGTGTCGAAAAACAAAGCGtggttcttttttgttgttgttgttcttcttctttttctttttgttaacaCGTCACGTTATGAAATGAGGAGCATATCACACTGCAGCACAAGGAAAAGCAATGGACTCAGAGCCCTGTGGTACCTCAGCACTGGTATTTCATGGTACTTTATAGATGAAGGATTGTTTGCAGGATGGGTCCTGTAATTCCCCGGGATGCTCATTTTCATGAAGAATTAAATGGCCACGCTGAGTTGTAATGGCTGCCATGGTGTATGGAAGTGtaaagtaaatgtgtttgaagGAAGTGAAAGGCAACGGTTTCCCCAGCTGCACCTCAGTTGTTTCTCCAAGTGTTGGTCATTGTAATTCAGAGTGACCCTGGCATTTCTGTGCTctaagtgtgtttgtttttgtgattgaaATCAGAAATCTATTGTTTCGGCCTAAACTGCAACAAGGTTTATTATTCCCAAGAATCTCTCTGGGAACACCCCACTTCCTGCTCCTCCCTCAGTGATTCTTTGAGCATGCTCAGAGCAGCTGGTAACAGACAGACAAGCTGTATAGAAACAGCACtaagctt

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29111 lncRNA downstream 74015 15734625 ~ 15800952 (-) True G23225
TU28948 lncRNA downstream 743369 15131388 ~ 15131598 (-) True G23105
TU28944 lncRNA downstream 850222 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 1394768 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 1685279 14184702 ~ 14189688 (-) True G22971
TU29141 lncRNA upstream 177718 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 347096 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 401176 16291541 ~ 16299256 (-) True AMCG00007366
TU29252 lncRNA upstream 488153 16378518 ~ 16380291 (-) True G23344
TU29290 lncRNA upstream 770516 16660881 ~ 16662665 (-) True G23379
AMCG00007358 mRNA downstream 99455 15756293 ~ 15775512 (-) True AMCG00007358
AMCG00007359 mRNA downstream 118717 15750108 ~ 15756250 (-) True AMCG00007359
AMCG00007353 mRNA downstream 489965 15377618 ~ 15385002 (-) True AMCG00007353
AMCG00007349 mRNA downstream 561534 15288340 ~ 15313433 (-) True AMCG00007349
AMCG00007348 mRNA downstream 597009 15221097 ~ 15277958 (-) True AMCG00007348
AMCG00007363 mRNA upstream 43782 15934147 ~ 15938530 (-) True AMCG00007363
AMCG00007362 mRNA upstream 88948 15979313 ~ 15988623 (-) True AMCG00007362
AMCG00007364 mRNA upstream 379602 16269967 ~ 16270377 (-) True AMCG00007364
AMCG00007366 mRNA upstream 406637 16297002 ~ 16314032 (-) False AMCG00007366
AMCG00007365 mRNA upstream 431213 16321578 ~ 16345580 (-) True AMCG00007365
TU28749 other downstream 1928902 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 2522894 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 5684763 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 7478743 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 8368092 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 430632 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 430672 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 639809 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 2165105 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 2885995 18776360 ~ 18777638 (-) True G23838

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027451 True 1496 lncRNA 0.45 2 NC_007129.7 49953146 ~ 49964921 (-)