RNA id: AMCG00007474


Basic Information

Item Value
RNA id AMCG00007474
length 825
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00007474
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19643953 ~ 19652843 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCAAAGTTCAGGCAGGCATTTCCACTCTCAGCCAGATTCTCACCCCTTCCTCCAAGCTCCTTTCCTGAGCCGAAGGGACCAAGCAGAGGACAGTATGGGTAGTTGGGAGAAGACCACTTCCGCCATGCTGGACCAGGCTCTGCACATCAACCACGAGATTGCCAGCAGCCTGCGGCGGGGCCACAGCAATGGCGGGGTGGGGCAAGCGGTCAGGCAGTTGCTGGAGGAACACATCCACATCATTACAGCCATCGTCAGTCGATTGAACAGAGATATAGAGgtCCTTCAGGAGCAGACGCGAATGCGAGCTGGAGTGACCCACAGCGTCAACCCTGCACCCAAGGCCCCGGGTCTGCAATCGGTCTCCACACTGAGCGACCTCCGCGGCCGCATTGCCAGGTGTGACGCCAGTATTGCCAGGCTATCAGCTGACATCAGATCCACAAATAACGACATTCAGGTCCTCCATAAAGAGAAGCAAGCCTTGACCGCAGATCTGCGATCCAAAATCAAGGACATAGAGCTCCAGATCTCAGTGGTGTGCAGCAGGCTGGAGCAGTCCGTAGCACTTCAGGAGGCCAAGACAAACGCTTCACAGGCACACAGCGCTCACCAGCTCCACCTCCTGGACACAAGGTTAAACACAGTCATTGATGAACTGAAAGGGCGACTCGTGACGGCTCAGCACTGGCTGGAGAAGGAGCAGGAGAAGGCAGTCCAGGGGGTCTCTCACAAGATTGAGCAGCTCTCCCAGCTCATCAAAAACACAACTGTAAGCCACCATGACCGAAATATGCCACAGCAGGACACCTTACTGTACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30064 lncRNA downstream 63969 19579781 ~ 19579984 (-) True G24003
TU30035 lncRNA downstream 162866 19480014 ~ 19481087 (-) True G23982
TU29891 lncRNA downstream 742356 18901365 ~ 18901597 (-) True G23875
TU29883 lncRNA downstream 776474 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 813866 18829865 ~ 18830087 (-) True G23854
TU30182 lncRNA upstream 138858 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 215015 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 558176 20211019 ~ 20222004 (-) False AMCG00007494
TU30294 lncRNA upstream 558176 20211019 ~ 20222004 (-) True AMCG00007494
TU30296 lncRNA upstream 558176 20211019 ~ 20222004 (-) False AMCG00007494
AMCG00007475 mRNA downstream 21011 19603095 ~ 19622942 (-) True AMCG00007475
AMCG00007471 mRNA downstream 60726 19580418 ~ 19583227 (-) True AMCG00007471
AMCG00007470 mRNA downstream 130974 19482612 ~ 19512979 (-) True AMCG00007470
AMCG00007459 mRNA downstream 456861 19182599 ~ 19187092 (-) True AMCG00007459
AMCG00007460 mRNA downstream 464907 19168814 ~ 19179046 (-) True AMCG00007460
AMCG00007477 mRNA upstream 61350 19714193 ~ 19717796 (-) True AMCG00007477
AMCG00007479 mRNA upstream 71364 19724207 ~ 19751795 (-) True AMCG00007479
AMCG00007481 mRNA upstream 139857 19792700 ~ 19799752 (-) False AMCG00007481
AMCG00007480 mRNA upstream 147531 19800374 ~ 19818066 (-) True AMCG00007480
AMCG00007487 mRNA upstream 264258 19917101 ~ 19923149 (-) False AMCG00007487
TU29846 other downstream 866315 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1585004 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 3022048 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 3321302 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 262303 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 678670 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 818268 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4318828 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 4612981 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile