RNA id: AMCG00008817


Basic Information

Item Value
RNA id AMCG00008817
length 456
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00008817
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12641987 ~ 12651818 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCTGGGGaactttgggggggTAAGCGCTGCGCCTCCTGCCCTCACCCTGTCGTCTGTCATGGGCAAGAAGAGCCAGCGGCGTctggacgaggaggaggaggagtcaTCGGAGGAGGAAGAGTACGTGGTGGAGAAGGTGCTGGACCGGCGGAGGAAAAACTCCACCGAGGAGGACGACGACAGCAAAgccaagaagaagaaagagGACGACATCTTAATAGCGAGGGGCTTCGAGAGAGGCCTGGAGCCAGAGAAGATCATCGGAGCCACCGACTCCTGCGGAGACCTCATGTTCCTCATGAAGTGGAAAGACTCGGACGAGGCTGACCTGGTGCTGGCCAAGGAAGCCAACGTGAAGTGCCCGCAGATCGTCATCGCCTTCTACGAGGAGCGGCTGACCTGGCACGAGGACGGGGACAAGAAGGAGAAGGCCGGACCAGGAAGGATTTAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64692 lncRNA downstream 36847 12601322 ~ 12605140 (-) False AMCG00008815
TU64684 lncRNA downstream 92370 12547400 ~ 12549617 (-) True G51707
TU64683 lncRNA downstream 101643 12539607 ~ 12540344 (-) True G51706
TU64677 lncRNA downstream 138308 12503462 ~ 12503679 (-) True G51700
TU64668 lncRNA downstream 165788 12454919 ~ 12476199 (-) True G51693
TU64716 lncRNA upstream 5408 12657226 ~ 12660117 (-) True G51724
TU64717 lncRNA upstream 6666 12658484 ~ 12660117 (-) False G51724
TU64823 lncRNA upstream 255503 12907321 ~ 12908333 (-) True G51809
TU64825 lncRNA upstream 268727 12920545 ~ 12920791 (-) True G51811
TU64876 lncRNA upstream 271386 12923204 ~ 12924656 (-) True G51851
AMCG00008815 mRNA downstream 36727 12601291 ~ 12605260 (-) True AMCG00008815
AMCG00008802 mRNA downstream 382656 12248300 ~ 12259331 (-) True AMCG00008802
AMCG00008801 mRNA downstream 401928 12237425 ~ 12240059 (-) True AMCG00008801
AMCG00008796 mRNA downstream 480465 12150161 ~ 12161522 (-) True AMCG00008796
AMCG00008797 mRNA downstream 495647 12107882 ~ 12146340 (-) True AMCG00008797
AMCG00008818 mRNA upstream 1795 12653613 ~ 12653945 (-) True AMCG00008818
AMCG00008816 mRNA upstream 14017 12665835 ~ 12668432 (-) True AMCG00008816
AMCG00008822 mRNA upstream 65299 12717117 ~ 12721189 (-) True AMCG00008822
AMCG00008823 mRNA upstream 73706 12725524 ~ 12735479 (-) True AMCG00008823
AMCG00008821 mRNA upstream 87355 12739173 ~ 12745962 (-) True AMCG00008821
TU64350 other downstream 1315628 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 1346237 11235642 ~ 11295750 (-) False AMCG00008777
TU64128 other downstream 1842833 10797632 ~ 10799154 (-) True G51250
TU64105 other downstream 1929502 10680278 ~ 10712485 (-) False G51241
TU64811 other upstream 238993 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 243517 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 349008 13000826 ~ 13001888 (-) True G51867
TU64926 other upstream 438719 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 605888 13257706 ~ 13261822 (-) True AMCG00008853

Expression Profile