RNA id: TU64128


Basic Information

Item Value
RNA id TU64128
length 636
RNA type TUCP
GC content 0.56
exon number 2
gene id G51250
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10797632 ~ 10799154 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaCCCTATATCATTTTTCGAgaggggaaaagagaaaaaaaaagttggcaTGAAACAGAAGGATTAGTGAAGCTCCTTGTTACTCTCTTCTTCTCTGAGGCCCTCTGTGTTCCTCCTGCAGACCAATATAGTGGATTTTCTGCTCAGGTCATCCAGCATGCTGTAGTAGTGGCTGTAGTCGTGGGCGGCCGGGCCACTCTTCTCCAGCACCTCTCGGATCTGCAGCTCCAGTTTGCTGTTGGCCTGCTCCAGGTTCCTCACCGTCTCCAGGTAGTTGGCCAGACGGTCGTTCAGGTTCTGCATGGTCTCCTTCTCGTTGCGGACCGCCGCTGAGCCACTGATCGACATCGAGGAAGAGAAGCCCCCTCCCTGGCCGAAGCCAGAGGATCCCCCCACCGTGGAGATCCGGGTGCCAAAGCCGCCTGATCCCGCGTACATGCTGGCCGAGCTGCTGAGGGGTCGGTTGAGCGACTGGGTTATCCTCTGGCTGGATACCATGGGGCGTGTAGACCTGACAGCGTAGGAAGTGGATCTAAAATCCATGATGACTGGGTAGATTAGCAAAACGTGAGTCagaggagcgagagagagctgGAGACTGCGACCTGGAGTGGCTGAGATGTGTGGACACAGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64104 lncRNA downstream 85147 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA downstream 85147 10675756 ~ 10712485 (-) False G51241
TU64107 lncRNA downstream 85147 10675756 ~ 10712485 (-) False G51241
TU64111 lncRNA downstream 85147 10675756 ~ 10712485 (-) False G51241
TU64116 lncRNA downstream 123777 10668711 ~ 10673855 (-) True G51243
TU64129 lncRNA upstream 1954 10801108 ~ 10803709 (-) True G51251
TU64130 lncRNA upstream 1954 10801108 ~ 10803709 (-) False G51251
TU64148 lncRNA upstream 39952 10839106 ~ 10839672 (-) True G51261
TU64265 lncRNA upstream 258523 11057677 ~ 11059926 (-) True G51344
TU64261 lncRNA upstream 258536 11057690 ~ 11140273 (-) False G51344
AMCG00008751 mRNA downstream 25978 10764016 ~ 10771654 (-) True AMCG00008751
AMCG00008750 mRNA downstream 72456 10719492 ~ 10725176 (-) True AMCG00008750
AMCG00008748 mRNA downstream 118659 10670949 ~ 10678973 (-) False AMCG00008748
AMCG00008747 mRNA downstream 135441 10655011 ~ 10662191 (-) True AMCG00008747
AMCG00008744 mRNA downstream 222731 10560866 ~ 10574901 (-) True AMCG00008744
AMCG00008756 mRNA upstream 159430 10958584 ~ 10972379 (-) True AMCG00008756
AMCG00008765 mRNA upstream 205002 11004156 ~ 11011571 (-) True AMCG00008765
AMCG00008763 mRNA upstream 222394 11021548 ~ 11035727 (-) True AMCG00008763
AMCG00008761 mRNA upstream 239148 11038302 ~ 11044119 (-) True AMCG00008761
AMCG00008764 mRNA upstream 245809 11044963 ~ 11051426 (-) True AMCG00008764
TU64119 other downstream 79431 10677263 ~ 10718201 (-) False AMCG00008748
TU64105 other downstream 85147 10680278 ~ 10712485 (-) False G51241
TU64120 other downstream 97149 10677263 ~ 10700483 (-) True AMCG00008748
TU64108 other downstream 114759 10680278 ~ 10682873 (-) True G51241
TU64089 other downstream 194259 10573483 ~ 10603373 (-) False AMCG00008744
TU64340 other upstream 436488 11235642 ~ 11295750 (-) False AMCG00008777
TU64350 other upstream 521656 11320810 ~ 11326359 (-) False AMCG00008777
TU64811 other upstream 2091657 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 2096181 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 2201672 13000826 ~ 13001888 (-) True G51867

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042723 False 757 processed_transcript 0.55 3 NC_007134.7 10347877 ~ 10350429 (+)
grasscarp (Ctenopharyngodon idella) CI01000305_00342924_00346089.mRNA True 1712 mRNA 0.50 7 CI01000305 342816 ~ 346229 (+)
striped catfish (Pangasianodon hypophthalmus) TU301848 False 2159 TUCP 0.46 4 NC_047610.1 14669804 ~ 14673952 (+)
mexican tetra (Astyanax mexicanus) TU185592 True 593 TUCP 0.60 2 NC_035911.1 34702618 ~ 34704611 (+)