RNA id: AMCG00009276


Basic Information

Item Value
RNA id AMCG00009276
length 1696
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00009276
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31419840 ~ 31424011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTGCCATGGGAGTGAACAGGGTGAAGAGATCCATCTACCAACACCTTACTTGTCCCTCCTGCAAGAAGCTCTTTTCCCAGCCTTACATTCTGCCATGTAATCACAGTGTGTGCAAGCACTGCATTGGAGTTATGAAGAAAAAGGCTTCCTGTGATGGAAGCAAAGCAAAGACAGTGAGGTGTCCAGTCTGCAGCGTAGAACACTGCTGTGCGCAAAACAGCACACTGGATTTCCCAGAAAACCATGTTCTGGGGAATATTGTGAGAAGACAATGTGAAAAGCAAGCTCAGTCAAAAAACAATTGCCCTCAAAGGAAGCAGCCTCTGGCAGGTGAACAGTTTGTCAACTGTGAGCTATGCCTGAAGGACAAGAAGCCTTCCGAAAGCCTCAATTTCTGCAAGAAATGTCTGAGGAAACTTCACAACAACCCTGCTTTCCAGTCTCACACCTTGATCGAACCTGCAAAAAAGCTGGGTGAATTAGCATGCTTCTACCACCCTGGAAAGATCTTGACGCACTACAGCTTTACCGATGGAAGAACCGTTTGTGAAGAGTGCACGAATGTCACCTCTGACACTGCGGTGATTTCTGAGGCTTATGTCAACAAATCAAGAGGCTTACATGCAGCTCTCGATCAAGCAGTGAAAGCAAAAGAACTGTGTCAATCTGACATCAGAGAGATTGGATTTTTAAAATCCAGACTTAAGCCACAAATGAAGGAGCTGAACAGAAGGGTGACTGAAGGATTCAAGGACTTGCACAAGAAGCTCACAGAAAAAGAGGAGGAGATAAAAGGAGTGATTGAGAAGTTGTACAAGGAAACTGAAGAAGATGCTGAGCAGCTCATCAGCGATTCctcaaaacatgtttatatccTGGAGGGTCTGGTTCAATTCTCTCACGAGTCCCTGAAGGAGAAGAATGAAACAGTGTTCCTGCAGGGCGTTGATAATACCATCTACCAGATCTGCAAGGTTTTAGATGCGAATTGCAAGTCCTGCGAGACCTTAAAACAAGAACCGCTTAAAAACATAACGGTAGACTTTAAAAGTATCACGGATGGTTTGAGCAAACTTTACACGGAGCATATCAATTATGAAAAACCTACCAAGAAGTTTGCTGCTCCAGGAACCATTACTACCTCCAGAGCATCTTTAAATGGTTCTGCTGTCCCAGTAGGAGGTCAACCTGTAGAGAGCACAGAAACGGAAGAGCAGAAACAGAATTCCGAGAACTCCAAAGACTCTGTGACCAGCCCACAACCGAAGCCTGAAATAACAGTCCCTAGAGAGAATCAGTCCAAGTCAAATAAAGTTCGTTTTAGGACATCTTCCAGTGACAAACTGAAGCATGAGAAGTCGGAGAAAACACCAGTCAGGAAAGCAGTCTGTGAAATCAAGGATGACATACTGCTGCCCAAACAACCATTCATCTACCGGCACATTGTGAATGGAGTCTCAGTCCAGATCATTTGGATGTTTCCCATTGGAGAGGGTATTAATTCTTTTGATGTTCATTTCCAAGAAGTAGTTTCTCTCAATTCCACCATGGATCTACCACAGGATCAAGGCAAGCTGGTCTCTGGTATAGAGAAATGCTCCTACAAAGCAGAGTGTCTGAATCCCAATGCCCAGTATATCTTCACAGTTCGGTCACAGAACACGTTTGGAGAGGGGCCATGGAGTCATGCTTAC

Function

GO: NA

KEGG:

id description
K12018 TRIM42; tripartite motif-containing protein 42

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69761 lncRNA upstream 256689 31155518 ~ 31163151 (+) True G55807
TU69754 lncRNA upstream 469631 30947366 ~ 30950209 (+) True G55800
TU69680 lncRNA upstream 817808 30599932 ~ 30602032 (+) True G55745
TU69678 lncRNA upstream 819606 30599474 ~ 30600234 (+) False G55745
TU69639 lncRNA upstream 922236 30495543 ~ 30497604 (+) True G55707
TU69914 lncRNA downstream 118610 31542621 ~ 31547232 (+) True G55926
TU69917 lncRNA downstream 124520 31548531 ~ 31552162 (+) True G55929
TU70028 lncRNA downstream 629776 32053787 ~ 32057482 (+) True G56021
TU70072 lncRNA downstream 742854 32166865 ~ 32168048 (+) True G56062
TU70077 lncRNA downstream 750296 32174307 ~ 32179259 (+) True G56064
AMCG00009278 mRNA upstream 7716 31394879 ~ 31412124 (+) True AMCG00009278
AMCG00009277 mRNA upstream 49063 31355117 ~ 31370777 (+) True AMCG00009277
AMCG00009273 mRNA upstream 283270 31131150 ~ 31136570 (+) True AMCG00009273
AMCG00009258 mRNA upstream 472555 30944371 ~ 30947285 (+) True AMCG00009258
AMCG00009259 mRNA upstream 483922 30928174 ~ 30935918 (+) True AMCG00009259
AMCG00009281 mRNA downstream 169037 31593048 ~ 31604365 (+) True AMCG00009281
AMCG00009283 mRNA downstream 496676 31920687 ~ 31940691 (+) True AMCG00009283
AMCG00009284 mRNA downstream 530660 31954671 ~ 31959897 (+) True AMCG00009284
AMCG00009288 mRNA downstream 544808 31968819 ~ 31999086 (+) True AMCG00009288
AMCG00009292 mRNA downstream 584553 32008564 ~ 32009088 (+) True AMCG00009292
TU69474 other upstream 1424402 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 1508276 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 2245140 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 2312932 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 737749 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 2576785 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 2591659 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 3964903 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 5936090 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile