RNA id: AMCG00009281


Basic Information

Item Value
RNA id AMCG00009281
length 2750
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00009281
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31593048 ~ 31604365 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTTAATGGAGGTTTGAATATGTTAAGCTATTCTACTGTCATCTTAAGCTCAaagttcttgttttctttcgCCGCTTGATTTTTAATGTCTTATAGTGCACTTGATTCCAACCACACCGTTAAAAGAAGTCCAGCAACATGCCAAAAGCAGAAGGATTACTGTTCCCATCCCCTACACAGAGCCTCCAGTCTTGGACCCTATTTATGAAGCCTATGCATACTGCAACATTCCCAACAGAACGGAGCACAGCTGGGAAGGTCACAGCCCCCCTGATTATAAACTGCTGTCAGTGCAAGTGATGATTCGCCATGGTGACCGATATCCACTCTATTCCATTCCTAAAACCAAAAGGCCAGCTATTGACTGTACTTTGGTACCAAACAGGAAGCCCTCCCACCCTCGGCTGGCCGCCTTCATTAGTCACATGTCCAAAGCAGAGAGGGGCCAATGGGACAGTGCGATGAGCGCGATTCCCAGACTGCCCAGCCACACGGTGTGTGAGATGGGAGAACTCACACAGACAGGTATTGTACAGCATCTACACAACGGCCAGTTACTGCATGACACCTACATAAAGAAACACAAGCTGCTGCCTAACAATTGGGGCAGCAAGCACTTGTACATAGAATCGACCCGTAAGAGCCGGACCCTTCAGAGTGGCCTGGCCCTGCTCTACGGACTGCTGCCCGAGTTCGACTGGCAGAAGGTCAACGTCCGGCACCAGTGGAGCACCATCTTCTGCTCTGGCAGCTGCGATTGCCCCATGAGGAACCACTACCTGGAGGAGGAGCAGCGGAGGCAGTACAACCTGCGCGTGAAGAACACCTTGCTGGAGCAGACCTACATGGAAATGGCCAAGATAGTGGGGGTGCCGACGCGGCAGCTGAGAGCGGCCAATCCCATCGACTCTCTCCTGTGCCACTTCTGTCACAACATCACTTTCCCCTGCACCCAGAACGGCTGCATCAGCCTGAAACACTTCTCTGTCATCAAGGCCCAGCAGCTGGAGGACAAGAAGGACAGACACGAGAAGAAACTGTATTACAAGTACTCCCTGCTGGCCACCCACCCTTTCCTGAACCAGACAATCGCCCGCATGCAGAGGATAGCACAGGGGCGCAAGGATGAGCTGTTTGCCCTCTTCTCTGCCCACGATGTCACCGTGGCACCATTGCTCAGTGCCCTGGGGCTCTCTGAAGCCAGGTTCCCCAGATTTGCTGCCCGGATCACGTTTGAGCTGTGGAAGGGTGCGAAGGACAAAAACGACCTCTACGTCCGTATTCTGTACAACGGAGAGGACGTGACTTTCTTCACCTCATTCTGCCAGACTCACAGCAGGCATTCCGGCCCAGGCCTTTGTCCTTTCAAAAAGTTTCTCAATTTTGTGAGGAGGGACATGTTTGCCATCTTCAACAGCACTAATTACTTTGACGCTTGCCATAGGCGAATACTGTAAGTTGTTCATTCTGAAGCCACCAGGTTTAGTTGCAACTAATTGCTTGATGTCACCAGCACAGCAGTtgtcatatttattaatttatatttataggttaggaatgttatttttttgtttagtttagtcttTTTTAAGGTTGCCTTTTTGGCTAGTTAGTGACTTTGCTCATCTGTTCAAAATGTCACTGGAAATTCACTTACATAACTAGTGTAATGAATAGGTTTGCCTCATTTGCATTAttagaaaatatgaatatataatagtTCTTCAAATGGCATTGTAAcgtacttaattatttaatactattatttttgGGAAAATAATGGCGGTGCTTACgaaaacaatttacaataaaccAGTGTTACTGGTTTACAAATACCTTAAACAGTGTGCTCAGCATATCTTCTTCTGAACAGTAGATGGAgctaaacacttttttttcattcttcttgcTTCCTGAAGAATACTTGAAAAATCACTTTAGCTGGAATAGTACATTGCACATAAAAGCAGTTTTTAGATGCATAACTGTTAATAAAAGGAGTATAGAACAGGAGTTGTTTGAAAAAGTATAACCAAAACAATTTTATATCGCACATTCCAGTGGCAGGGAGTTTCTGTAACTTTGTTACTTCGTGGCcagtacattttatacatttccaagttattaataaagcaaaagaaccaatacaataatatattgtaatatgaaGACCACATGGATAGGAGGGTGAGATCAGTTGGTTTGCTGGAGTCATCTGACCATCATTCAGCAGCCGATCGACAAACGGTGATGATGAagatacattgtgtgtgtgtgtgtgtgtaaaacacaattgttgtttttatgatcTTCCTGCTGTATGCCACTCTCCATACTGTTTACCTTTTTAACAGCTGCAATATTACATTGTCTAAATCTACTGCACAAAAACGATGCATCTCaaaattttgtaatttgttttttatgtttcaaaAATTTGTCccgttttttttctctgtacacttgacttatattttgttttattttatctatatatttttctgctgGAGTTTAATTCCTGTTTCATTCAACATACTTTTATAATCCTGTTCCCACactaaaaatgtgtgttttgacaaTTTATAACTGTATTGGgggatttcaatatttttataaatttagAATAACATGCAGCACAAAACTAAATTGTAGCAGATATCAGATTCTTGTTTAAAGTAGatatttctagattttttttctagAGTTCTTTTCAATAATGCATATCTACTTGTTCATGTATAGTTGTTGg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K21403 PXYLP1; 2-phosphoxylose phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69917 lncRNA upstream 40886 31548531 ~ 31552162 (+) True G55929
TU69914 lncRNA upstream 45816 31542621 ~ 31547232 (+) True G55926
TU69761 lncRNA upstream 429897 31155518 ~ 31163151 (+) True G55807
TU69754 lncRNA upstream 642839 30947366 ~ 30950209 (+) True G55800
TU69680 lncRNA upstream 991016 30599932 ~ 30602032 (+) True G55745
TU70028 lncRNA downstream 449422 32053787 ~ 32057482 (+) True G56021
TU70072 lncRNA downstream 562500 32166865 ~ 32168048 (+) True G56062
TU70077 lncRNA downstream 569942 32174307 ~ 32179259 (+) True G56064
TU70149 lncRNA downstream 943642 32548007 ~ 32553904 (+) True G56120
TU70257 lncRNA downstream 1343772 32948137 ~ 32950966 (+) False G56211
AMCG00009276 mRNA upstream 169037 31419840 ~ 31424011 (+) True AMCG00009276
AMCG00009278 mRNA upstream 180924 31394879 ~ 31412124 (+) True AMCG00009278
AMCG00009277 mRNA upstream 222271 31355117 ~ 31370777 (+) True AMCG00009277
AMCG00009273 mRNA upstream 456478 31131150 ~ 31136570 (+) True AMCG00009273
AMCG00009258 mRNA upstream 645763 30944371 ~ 30947285 (+) True AMCG00009258
AMCG00009283 mRNA downstream 316322 31920687 ~ 31940691 (+) True AMCG00009283
AMCG00009284 mRNA downstream 350306 31954671 ~ 31959897 (+) True AMCG00009284
AMCG00009288 mRNA downstream 364454 31968819 ~ 31999086 (+) True AMCG00009288
AMCG00009292 mRNA downstream 404199 32008564 ~ 32009088 (+) True AMCG00009292
AMCG00009291 mRNA downstream 446139 32050504 ~ 32052393 (+) True AMCG00009291
TU69474 other upstream 1597610 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 1681484 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 2418348 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 2486140 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 557395 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 2396431 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 2411305 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 3784549 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 5755736 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile